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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 1
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX72943
CDX89368
CDX92752
CDX94382
CDX96432
CDY14318
CDY38260
CDY42756
CDY50002
CDY50003
CDY54381

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G05440.1 CDX72943 AT1G72770.1 19407142
AT5G05440.1 CDX96432 AT1G72770.1 19407142
AT5G05440.1 CDX72943 AT1G72770.1 19624469
AT5G05440.1 CDX96432 AT1G72770.1 19624469
AT5G05440.1 CDX89368 AT4G26080.1 21798944
AT5G05440.1 CDX92752 AT4G26080.1 21798944
AT5G05440.1 CDX94382 AT4G26080.1 21798944
AT5G05440.1 CDY14318 AT4G26080.1 21798944
AT5G05440.1 CDY42756 AT4G26080.1 21798944
AT5G05440.1 CDY50002 AT4G26080.1 21798944
AT5G05440.1 CDY50003 AT4G26080.1 21798944
AT5G05440.1 CDY38260 AT5G57050.1 21798944
AT5G05440.1 CDY54381 AT5G57050.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra028758.1-P Field mustard cytosol 83.76 100.0
CDX98844 Canola cytosol 92.89 89.71
CDX70150 Canola cytosol 91.88 88.73
AT5G05440.1 Thale cress cytosol 90.86 88.18
CDY72318 Canola cytosol 88.32 85.71
CDX80959 Canola cytosol 87.82 85.22
GSMUA_Achr9P04600_001 Banana cytosol 41.62 57.34
TraesCS4A01G114400.1 Wheat cytosol 51.78 56.98
TraesCS1B01G306800.1 Wheat mitochondrion 55.33 56.19
CDY54415 Canola cytosol 56.85 54.9
CDY18391 Canola plastid 56.85 54.9
CDX91449 Canola plastid 57.36 54.59
TraesCS1A01G297600.1 Wheat mitochondrion 55.33 54.23
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 55.33 54.23
CDY07739 Canola plastid 56.85 54.11
Zm00001d038436_P001 Maize plastid 54.82 54.0
CDY54453 Canola plastid 56.85 53.85
HORVU1Hr1G070420.1 Barley mitochondrion 54.82 53.73
CDY14471 Canola plastid 56.35 53.62
CDY58053 Canola cytosol 43.15 52.47
CDY68675 Canola cytosol 43.15 52.47
TraesCS3D01G342000.1 Wheat plastid 54.82 52.43
TraesCS3A01G348400.1 Wheat plastid 54.82 52.43
HORVU3Hr1G088100.1 Barley plastid 54.82 52.43
HORVU3Hr1G039010.1 Barley plastid 54.82 52.43
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 54.82 52.17
GSMUA_Achr6P32790_001 Banana cytosol 55.84 52.13
TraesCS2D01G087500.1 Wheat plastid 55.33 50.93
EES19683 Sorghum plastid 55.84 50.93
TraesCS2B01G105300.1 Wheat plastid 55.33 50.23
GSMUA_AchrUn_... Banana plastid 40.1 50.0
Zm00001d043014_P001 Maize cytosol 53.81 49.77
GSMUA_Achr9P17980_001 Banana cytosol 37.56 49.66
CDX78879 Canola cytosol 41.62 49.4
CDX99450 Canola cytosol 41.62 49.4
CDY58019 Canola cytosol 41.62 49.4
Os05t0473000-01 Rice cytosol 54.31 49.31
CDX93191 Canola cytosol 50.76 49.26
Zm00001d047705_P001 Maize plastid 54.31 49.08
CDY52923 Canola cytosol 50.76 48.78
EER92405 Sorghum plastid 54.31 48.2
GSMUA_Achr11P... Banana cytosol, plastid 38.58 48.1
TraesCS4B01G189800.1 Wheat cytosol 54.31 47.77
TraesCS4D01G191200.1 Wheat cytosol 54.31 47.77
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 53.3 47.73
GSMUA_Achr8P21220_001 Banana cytosol 41.12 47.65
CDX74796 Canola cytosol, nucleus, plastid 51.27 47.64
HORVU4Hr1G055220.1 Barley cytosol 53.81 47.32
CDY07608 Canola cytosol, mitochondrion 50.76 47.17
Os03t0297600-01 Rice cytosol 54.31 46.72
CDY11503 Canola cytosol 44.16 46.28
CDY24911 Canola cytosol, mitochondrion 49.75 46.01
CDY18867 Canola cytosol, mitochondrion, nucleus, plastid 49.24 45.75
CDX76731 Canola cytosol 43.65 45.74
GSMUA_Achr5P29490_001 Banana plastid 37.56 45.68
CDY01498 Canola cytosol 44.16 45.55
CDX90440 Canola cytosol 44.16 45.55
CDY70860 Canola cytosol 42.64 45.16
CDX89219 Canola cytosol 42.13 44.86
CDY70517 Canola cytosol 42.13 44.86
CDY15183 Canola cytosol 42.13 44.38
CDY64350 Canola cytosol 41.12 44.26
CDY38728 Canola cytosol 41.12 44.02
CDY69797 Canola cytosol 42.64 43.98
CDX90028 Canola cytosol 41.62 43.62
CDY04688 Canola cytosol 40.61 43.01
CDY25052 Canola cytosol 40.61 42.78
CDY61488 Canola cytosol 39.59 42.39
CDY49462 Canola cytosol 39.59 42.39
CDX96197 Canola cytosol 40.1 42.02
CDY53905 Canola cytosol 39.59 41.71
CDY27022 Canola cytosol 39.59 41.49
Os01t0827800-00 Rice plastid 53.3 41.02
CDY58505 Canola nucleus 43.65 40.95
CDX74368 Canola cytosol 40.1 40.93
GSMUA_Achr10P... Banana cytosol, plastid 40.61 40.4
CDY48030 Canola plastid 41.62 40.0
CDX76554 Canola cytosol 31.47 40.0
CDX77691 Canola nucleus 43.65 40.0
CDX91871 Canola cytosol 39.09 39.9
CDY22516 Canola plastid 41.12 39.51
CDX82120 Canola plastid 41.12 39.51
CDY08877 Canola cytosol 30.96 39.35
CDY68316 Canola nucleus 38.07 39.27
TraesCS2A01G089400.1 Wheat plastid 55.84 38.46
CDY03194 Canola nucleus 37.06 38.22
OQU87775 Sorghum endoplasmic reticulum, extracellular 51.27 37.13
CDY07165 Canola cytosol 10.66 35.0
Zm00001d012475_P001 Maize cytosol 54.31 34.29
Protein Annotations
EnsemblPlants:CDY04951EnsemblPlantsGene:GSBRNA2T00119679001Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydrataseInterPro:START-like_dom_sf
PANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604ProteinID:CDY04951ProteinID:CDY04951.1SEG:seg
SUPFAM:SSF55961UniParc:UPI0004EEFD82MapMan:11.1.2.1.1.1:::
Description
BnaAnng01330D
Coordinates
chrLK031958:+:811157..811750
Molecular Weight (calculated)
22018.2 Da
IEP (calculated)
6.365
GRAVY (calculated)
-0.259
Length
197 amino acids
Sequence
(BLAST)
001: MTSPVQLHHG FHTLQPPDQT DGLIRRVFLT RGMHVPEHVA MHHTHDLGPG KCCSSVVQTI HAPLESVWAL VRRFDNPKLY KNFVKQCRIV QGDGLHAGDL
101: REVMVVSGLP AVSSTERLEI LDEERYVISF SVVGGDHRLE NYRSVTTLHA SDDEGTVVVE SYVVDVPPGN TEEETLSFVD TIVRCNLQSL ARSTNRQ
Best Arabidopsis Sequence Match ( AT5G05440.1 )
(BLAST)
001: MRSPVQLQHG SDATNGFHTL QPHDQTDGPI KRVCLTRGMH VPEHVAMHHT HDVGPDQCCS SVVQMIHAPP ESVWALVRRF DNPKVYKNFI RQCRIVQGDG
101: LHVGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLKNYRS VTTLHASDDE GTVVVESYIV DVPPGNTEEE TLSFVDTIVR CNLQSLARST
201: NRQ
Arabidopsis Description
PYL5Abscisic acid receptor PYL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB1]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.