Factsheet for GSMUA_Achr9P17980_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr1P19740_001
GSMUA_Achr3P26270_001
GSMUA_Achr5P29000_001
GSMUA_Achr6P15180_001
GSMUA_Achr7P24000_001
GSMUA_Achr8P05700_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38310.1	GSMUA_Achr3P26270_001	AT1G72770.1	19407142
AT2G38310.1	GSMUA_Achr7P24000_001	AT1G72770.1	19407142
AT2G38310.1	GSMUA_Achr8P05700_001	AT1G72770.1	19407142
AT2G38310.1	GSMUA_Achr3P26270_001	AT1G72770.1	19624469
AT2G38310.1	GSMUA_Achr7P24000_001	AT1G72770.1	19624469
AT2G38310.1	GSMUA_Achr8P05700_001	AT1G72770.1	19624469
AT2G38310.1	GSMUA_Achr11P...	AT3G11410.1	19407142
AT2G38310.1	GSMUA_Achr5P29000_001	AT3G11410.1	19407142
AT2G38310.1	GSMUA_Achr6P15180_001	AT3G11410.1	19407142
AT2G38310.1	GSMUA_AchrUn_...	AT3G11410.1	19407142
AT2G38310.1	GSMUA_Achr11P...	AT5G59220.1	19407142
AT2G38310.1	GSMUA_Achr5P29000_001	AT5G59220.1	19407142
AT2G38310.1	GSMUA_Achr6P15180_001	AT5G59220.1	19407142
AT2G38310.1	GSMUA_AchrUn_...	AT5G59220.1	19407142
AT2G40330.1	GSMUA_Achr3P26270_001	AT1G72770.1	19407142
AT2G40330.1	GSMUA_Achr7P24000_001	AT1G72770.1	19407142
AT2G40330.1	GSMUA_Achr8P05700_001	AT1G72770.1	19407142
AT2G40330.1	GSMUA_Achr3P26270_001	AT1G72770.1	19624469
AT2G40330.1	GSMUA_Achr7P24000_001	AT1G72770.1	19624469
AT2G40330.1	GSMUA_Achr8P05700_001	AT1G72770.1	19624469
AT2G40330.1	GSMUA_Achr1P19740_001	AT2G20000.1	17944809
AT5G05440.1	GSMUA_Achr3P26270_001	AT1G72770.1	19407142
AT5G05440.1	GSMUA_Achr7P24000_001	AT1G72770.1	19407142
AT5G05440.1	GSMUA_Achr8P05700_001	AT1G72770.1	19407142
AT5G05440.1	GSMUA_Achr3P26270_001	AT1G72770.1	19624469
AT5G05440.1	GSMUA_Achr7P24000_001	AT1G72770.1	19624469
AT5G05440.1	GSMUA_Achr8P05700_001	AT1G72770.1	19624469

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plastid	77.18	72.78
GSMUA_Achr8P21220_001	Banana	cytosol	79.87	70.0
GSMUA_Achr9P04600_001	Banana	cytosol	64.43	67.13
GSMUA_Achr11P...	Banana	cytosol, plastid	70.47	66.46
GSMUA_Achr5P29490_001	Banana	plastid	66.44	61.11
Solyc05g052420.1.1	Tomato	cytosol	30.87	56.1
GSMUA_Achr10P...	Banana	cytosol, plastid	67.11	50.51
TraesCS4A01G114400.1	Wheat	cytosol	59.73	49.72
GSMUA_Achr6P32790_001	Banana	cytosol	68.46	48.34
TraesCS2D01G087500.1	Wheat	plastid	66.44	46.26
KRH00319	Soybean	cytosol	54.36	45.76
TraesCS2B01G105300.1	Wheat	plastid	66.44	45.62
HORVU4Hr1G055220.1	Barley	cytosol	67.79	45.09
Zm00001d028793_P001	Maize	cytosol, mitochondrion, plastid	66.44	45.0
TraesCS4B01G189800.1	Wheat	cytosol	67.11	44.64
TraesCS4D01G191200.1	Wheat	cytosol	66.44	44.2
EER92405	Sorghum	plastid	65.77	44.14
Zm00001d047705_P001	Maize	plastid	64.43	44.04
Bra028758.1-P	Field mustard	cytosol	48.32	43.64
KRH49452	Soybean	plastid	51.68	43.26
Os03t0297600-01	Rice	cytosol	65.77	42.79
KRH76014	Soybean	cytosol	59.73	41.2
VIT_13s0067g01940.t01	Wine grape	plastid	58.39	41.04
Solyc10g076410.1.1	Tomato	plastid	54.36	39.9
Solyc03g095780.1.1	Tomato	plastid	53.02	39.3
PGSC0003DMT400041080	Potato	mitochondrion	54.36	39.13
KRH73249	Soybean	plastid	54.36	38.94
PGSC0003DMT400053102	Potato	cytosol, plastid	52.35	38.81
PGSC0003DMT400053119	Potato	cytosol, plastid	52.35	38.81
PGSC0003DMT400053120	Potato	cytosol, plastid	52.35	38.81
GSMUA_Achr4P10630_001	Banana	mitochondrion	41.61	38.51
PGSC0003DMT400028658	Potato	nucleus	55.03	38.5
VIT_08s0058g00470.t01	Wine grape	plastid	58.39	38.33
Solyc10g085310.1.1	Tomato	plastid	54.36	38.03
CDX98844	Canola	cytosol	51.68	37.75
CDY04951	Canola	cytosol	49.66	37.56
AT5G05440.1	Thale cress	cytosol	51.01	37.44
Bra017125.1-P	Field mustard	plastid	51.01	37.25
CDX70150	Canola	cytosol	51.01	37.25
Bra009113.1-P	Field mustard	cytosol	51.01	37.25
CDY18391	Canola	plastid	51.01	37.25
CDY54415	Canola	cytosol	51.01	37.25
AT2G38310.1	Thale cress	plastid	51.68	37.2
CDY07739	Canola	plastid	51.68	37.2
Bra000052.1-P	Field mustard	plastid	51.68	37.2
PGSC0003DMT400061535	Potato	plastid	54.36	37.16
CDX93191	Canola	cytosol	50.34	36.95
CDX91449	Canola	plastid	51.01	36.72
Bra017012.1-P	Field mustard	cytosol	50.34	36.59
CDY52923	Canola	cytosol	50.34	36.59
CDY54453	Canola	plastid	51.01	36.54
CDX80959	Canola	cytosol	49.66	36.45
Solyc09g015380.1.1	Tomato	plastid	48.99	36.32
CDY14471	Canola	plastid	50.34	36.23
CDY72318	Canola	cytosol	48.99	35.96
Bra005853.1-P	Field mustard	cytosol	48.99	35.96
KRH14908	Soybean	plastid	52.35	35.78
PGSC0003DMT400069734	Potato	mitochondrion, plastid	49.66	35.58
AT2G40330.1	Thale cress	cytosol	51.01	35.35
PGSC0003DMT400075056	Potato	plastid	50.34	35.05
TraesCS2A01G089400.1	Wheat	plastid	67.11	34.97
CDX74796	Canola	cytosol, nucleus, plastid	49.66	34.91
Bra000184.1-P	Field mustard	cytosol, mitochondrion	48.99	34.43
CDY07608	Canola	cytosol, mitochondrion	48.99	34.43
CDY24911	Canola	cytosol, mitochondrion	48.99	34.27
Bra004967.1-P	Field mustard	mitochondrion	48.32	33.96
GSMUA_Achr4P19170_001	Banana	cytosol	43.62	33.51
CDY18867	Canola	cytosol, mitochondrion, nucleus, plastid	47.65	33.49
GSMUA_AchrUn_...	Banana	cytosol	40.27	32.26
GSMUA_Achr10P...	Banana	cytosol	40.27	32.26
GSMUA_Achr7P09320_001	Banana	cytosol	40.27	32.26
GSMUA_Achr8P14780_001	Banana	cytosol	43.62	31.55
GSMUA_Achr6P00980_001	Banana	cytosol	40.94	31.28
GSMUA_Achr10P...	Banana	cytosol	38.93	31.18
GSMUA_Achr2P19970_001	Banana	cytosol	38.26	30.65
Bra005115.1-P	Field mustard	plastid	30.2	30.2
GSMUA_Achr10P...	Banana	cytosol	39.6	29.95
Solyc06g050500.2.1	Tomato	plastid	55.03	29.82
KRH31193	Soybean	cytosol, golgi, plastid	51.01	29.57
GSMUA_Achr4P08490_001	Banana	cytosol	38.26	28.64
GSMUA_Achr4P15170_001	Banana	cytosol	47.65	28.4
GSMUA_Achr3P03480_001	Banana	cytosol	38.93	28.16
GSMUA_Achr8P19910_001	Banana	mitochondrion	38.26	27.27
GSMUA_Achr4P15670_001	Banana	cytosol	32.89	26.2
GSMUA_Achr2P15420_001	Banana	cytosol, mitochondrion, nucleus, plastid	37.58	24.56

Protein Annotations

EnsemblPlants:GSMUA_Achr9P17980_001	EnsemblPlants:GSMUA_Achr9T17980_001	EnsemblPlantsGene:GSMUA_Achr9G17980_001	Gene3D:3.30.530.20	InterPro:IPR023393	InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sf	PANTHER:PTHR31213	PANTHER:PTHR31213:SF3	PFAM:PF10604	SEG:seg	SUPFAM:SSF55961
UniParc:UPI0002963196	UniProt:M0U1A5	MapMan:11.1.2.1.1.1	:	:	:

Description

cyclase/dehydrase family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G17980_001]

Coordinates

chr9:+:12577067..12577651

Molecular Weight (calculated)

16165.3 Da

IEP (calculated)

6.939

GRAVY (calculated)

-0.168

Length

149 amino acids

Sequence
(BLAST)

001: MPFLPPPKPS TQPKRVTGGG SAEQRCTAHA LPEAVAKYHE HAVGRKQCCS AVVQEVAAPV AVVCTERLEI LDDEHHVLSF RVVGGEHRLA NYRSVTTIHP
101: APEPVGHAMV VESYVVDVPP GNTRDDTRVF VDTIVRCNLQ SLARTAEAL

Best Arabidopsis Sequence Match ( AT5G05440.1 )
(BLAST)

001: MRSPVQLQHG SDATNGFHTL QPHDQTDGPI KRVCLTRGMH VPEHVAMHHT HDVGPDQCCS SVVQMIHAPP ESVWALVRRF DNPKVYKNFI RQCRIVQGDG
101: LHVGDLREVM VVSGLPAVSS TERLEILDEE RHVISFSVVG GDHRLKNYRS VTTLHASDDE GTVVVESYIV DVPPGNTEEE TLSFVDTIVR CNLQSLARST
201: NRQ

Arabidopsis Description

PYL5Abscisic acid receptor PYL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLB1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.