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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra016034.1-P
Bra039034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40330.1 Bra016034.1-P AT1G72770.1 19407142
AT2G40330.1 Bra016034.1-P AT1G72770.1 19624469
AT2G40330.1 Bra039034.1-P AT2G20000.1 17944809
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52923 Canola cytosol 100.0 100.0
CDX93191 Canola cytosol 97.56 98.52
Bra000184.1-P Field mustard cytosol, mitochondrion 88.29 85.38
Bra004967.1-P Field mustard mitochondrion 87.32 84.43
AT2G40330.1 Thale cress cytosol 87.8 83.72
Solyc05g052420.1.1 Tomato cytosol 23.9 59.76
Bra028758.1-P Field mustard cytosol 47.8 59.39
TraesCS4A01G114400.1 Wheat cytosol 51.71 59.22
PGSC0003DMT400053102 Potato cytosol, plastid 56.1 57.21
PGSC0003DMT400053119 Potato cytosol, plastid 56.1 57.21
PGSC0003DMT400053120 Potato cytosol, plastid 56.1 57.21
Solyc03g095780.1.1 Tomato plastid 56.1 57.21
KRH73249 Soybean plastid 57.56 56.73
TraesCS1B01G306800.1 Wheat mitochondrion 53.66 56.7
Bra017125.1-P Field mustard plastid 55.12 55.39
TraesCS1D01G293600.1 Wheat mitochondrion, plastid 54.15 55.22
Bra000052.1-P Field mustard plastid 55.61 55.07
Zm00001d038436_P001 Maize plastid 53.66 55.0
TraesCS1A01G297600.1 Wheat mitochondrion 53.66 54.73
HORVU1Hr1G070420.1 Barley mitochondrion 53.17 54.23
TraesCS3B01G380300.1 Wheat mitochondrion, plastid 54.63 54.11
HORVU3Hr1G088100.1 Barley plastid 54.15 53.88
HORVU3Hr1G039010.1 Barley plastid 54.15 53.88
Bra025048.1-P Field mustard cytosol 44.39 53.53
TraesCS3D01G342000.1 Wheat plastid 53.66 53.4
KRH14908 Soybean plastid 56.59 53.21
GSMUA_Achr9P04600_001 Banana cytosol 37.07 53.15
TraesCS3A01G348400.1 Wheat plastid 53.17 52.91
Os05t0473000-01 Rice cytosol 55.61 52.53
PGSC0003DMT400069734 Potato mitochondrion, plastid 53.17 52.4
Bra005115.1-P Field mustard plastid 38.05 52.35
PGSC0003DMT400061535 Potato plastid 55.61 52.29
GSMUA_Achr6P32790_001 Banana cytosol 53.66 52.13
EES19683 Sorghum plastid 54.63 51.85
Bra005853.1-P Field mustard cytosol 51.22 51.72
Zm00001d043014_P001 Maize cytosol 53.66 51.64
Bra009113.1-P Field mustard cytosol 50.73 50.98
TraesCS2D01G087500.1 Wheat plastid 52.68 50.47
HORVU4Hr1G055220.1 Barley cytosol 55.12 50.45
GSMUA_Achr9P17980_001 Banana cytosol 36.59 50.34
TraesCS4D01G191200.1 Wheat cytosol 54.63 50.0
TraesCS4B01G189800.1 Wheat cytosol 54.63 50.0
TraesCS2B01G105300.1 Wheat plastid 52.68 49.77
EER92405 Sorghum plastid 53.66 49.55
Zm00001d047705_P001 Maize plastid 52.68 49.54
GSMUA_AchrUn_... Banana plastid 38.05 49.37
GSMUA_Achr11P... Banana cytosol, plastid 37.56 48.73
Bra013334.1-P Field mustard cytosol 39.02 48.19
Zm00001d028793_P001 Maize cytosol, mitochondrion, plastid 51.71 48.18
GSMUA_Achr5P29490_001 Banana plastid 38.05 48.15
Os03t0297600-01 Rice cytosol 53.66 48.03
Bra007772.1-P Field mustard cytosol 41.95 45.74
Bra003463.1-P Field mustard cytosol 40.98 44.92
KRH31193 Soybean cytosol, golgi, plastid 56.1 44.75
GSMUA_Achr8P21220_001 Banana cytosol 37.07 44.71
Bra033267.1-P Field mustard cytosol 40.49 44.62
Os01t0827800-00 Rice plastid 55.12 44.14
Bra026299.1-P Field mustard cytosol 39.02 43.48
Bra012635.1-P Field mustard cytosol 40.0 42.93
Solyc06g050500.2.1 Tomato plastid 56.59 42.18
Bra003077.1-P Field mustard cytosol 37.56 41.85
Bra000938.1-P Field mustard cytosol 39.02 41.45
Bra013262.1-P Field mustard cytosol 38.54 41.36
Bra029093.1-P Field mustard cytosol 36.59 40.76
Bra022634.1-P Field mustard cytosol 37.07 40.43
GSMUA_Achr10P... Banana cytosol, plastid 38.05 39.39
OQU87775 Sorghum endoplasmic reticulum, extracellular 50.24 37.87
TraesCS2A01G089400.1 Wheat plastid 52.68 37.76
Bra008064.1-P Field mustard plastid 37.56 37.56
Bra017526.1-P Field mustard nucleus 33.17 37.16
Bra024995.1-P Field mustard nucleus 38.05 37.14
Bra021032.1-P Field mustard cytosol 28.29 36.94
Zm00001d012475_P001 Maize cytosol 51.71 33.97
Protein Annotations
EnsemblPlants:Bra017012.1EnsemblPlants:Bra017012.1-PEnsemblPlantsGene:Bra017012Gene3D:3.30.530.20InterPro:IPR023393InterPro:Polyketide_cyclase/dehydratase
InterPro:START-like_dom_sfPANTHER:PTHR31213PANTHER:PTHR31213:SF3PFAM:PF10604SEG:segSUPFAM:SSF55961
UniParc:UPI0002544F35UniProt:M4DKI2MapMan:11.1.2.1.1.1:::
Description
AT2G40330 (E=9e-090) | Bet v I allergen family protein
Coordinates
chrA04:-:17144990..17145607
Molecular Weight (calculated)
22766.7 Da
IEP (calculated)
6.569
GRAVY (calculated)
-0.403
Length
205 amino acids
Sequence
(BLAST)
001: MPTSLQFQRP STAAESANHH HHKQLQKMSL TRGMADVPEH VELSHTHVVE PSQCFSVVVQ DVDAPASAVW SILSRFEHPQ AYKHFVRSCH VAAGDGREVG
101: SVREVRVVSG LPAAFSLERL EIMDDDRHVM SFSVVGGDHR LQNYRSVTTV HESTDDNKKT RVVESYVVDV PAGNDKDETC SFADTIVRCN LQSLAKLAEN
201: PPRIS
Best Arabidopsis Sequence Match ( AT2G40330.1 )
(BLAST)
001: MPTSIQFQRS STAAEAANAT VRNYPHHHQK QVQKVSLTRG MADVPEHVEL SHTHVVGPSQ CFSVVVQDVE APVSTVWSIL SRFEHPQAYK HFVKSCHVVI
101: GDGREVGSVR EVRVVSGLPA AFSLERLEIM DDDRHVISFS VVGGDHRLMN YKSVTTVHES EEDSDGKKRT RVVESYVVDV PAGNDKEETC SFADTIVRCN
201: LQSLAKLAEN TSKFS
Arabidopsis Description
PYL6Abscisic acid receptor PYL6 [Source:UniProtKB/Swiss-Prot;Acc:Q8S8E3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.