Factsheet for Bra039034.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000184.1-P
Bra000756.1-P
Bra003214.1-P
Bra004677.1-P
Bra004967.1-P
Bra005063.1-P
Bra005544.1-P
Bra006219.1-P
Bra006369.1-P
Bra007163.1-P
Bra008327.1-P
Bra011430.1-P
Bra013534.1-P
Bra013655.1-P
Bra014743.1-P
Bra014744.1-P
Bra015512.1-P
Bra017012.1-P
Bra017408.1-P
Bra018081.1-P
Bra019347.1-P
Bra024475.1-P
Bra025616.1-P
Bra026274.1-P
Bra028905.1-P
Bra029426.1-P
Bra032414.1-P
Bra032422.1-P
Bra033769.1-P
Bra034555.1-P
Bra035062.1-P
Bra037011.1-P
Bra039034.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G20000.1	Bra015512.1-P	AT1G06590.1	20706207
AT2G20000.1	Bra032414.1-P	AT1G06590.1	20706207
AT2G20000.1	Bra035062.1-P	AT1G78770.1	20706207
AT2G20000.1	Bra025616.1-P	AT2G04660.1	17944809
AT2G20000.1	Bra028905.1-P	AT2G04660.1	17944809
AT2G20000.1	Bra024475.1-P	AT2G18290.1	17944809
AT2G20000.1	Bra039034.1-P	AT2G20000.1	17944809
AT2G20000.1	Bra005063.1-P	AT2G39090.1	20706207
AT2G20000.1	Bra000184.1-P	AT2G40330.1	17944809
AT2G20000.1	Bra004967.1-P	AT2G40330.1	17944809
AT2G20000.1	Bra017012.1-P	AT2G40330.1	17944809
AT2G20000.1	Bra004677.1-P	AT2G42260.1	20706207
AT2G20000.1	Bra006369.1-P	AT3G11270.1	20706207
AT2G20000.1	Bra017408.1-P	AT3G11270.1	20706207
AT2G20000.1	Bra032422.1-P	AT3G11270.1	20706207
AT2G20000.1	Bra018081.1-P	AT3G48150.1	20706207
AT2G20000.1	Bra033769.1-P	AT3G48150.1	20706207
AT2G20000.1	Bra003214.1-P	AT3G55440.1	20706207
AT2G20000.1	Bra007163.1-P	AT3G55440.1	20706207
AT2G20000.1	Bra014743.1-P	AT3G55440.1	20706207
AT2G20000.1	Bra014744.1-P	AT3G55440.1	20706207
AT2G20000.1	Bra000756.1-P	AT4G11920.1	17944809
AT2G20000.1	Bra029426.1-P	AT4G11920.1	17944809
AT2G20000.1	Bra013534.1-P	AT4G21530.1	20706207
AT2G20000.1	Bra013655.1-P	AT4G22910.1	17944809
AT2G20000.1	Bra019347.1-P	AT4G22910.1	17944809
AT2G20000.1	Bra026274.1-P	AT4G28230.1	20706207
AT2G20000.1	Bra011430.1-P	AT4G33270.1	17944809
AT2G20000.1	Bra034555.1-P	AT4G33270.1	17944809
AT2G20000.1	Bra037011.1-P	AT4G33270.1	17944809
AT2G20000.1	Bra006219.1-P	AT5G13840.1	17944809
AT2G20000.1	Bra005544.1-P	AT5G26900.1	17944809
AT2G20000.1	Bra008327.1-P	AT5G26900.1	17944809
AT2G20000.1	Bra005544.1-P	AT5G27570.1	17944809
AT2G20000.1	Bra008327.1-P	AT5G27570.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35917	Canola	cytosol	100.0	100.0
AT2G20000.1	Thale cress	cytosol	89.37	89.25
KRH41728	Soybean	extracellular, vacuole	4.58	72.34
VIT_11s0016g03260.t01	Wine grape	cytosol	72.27	70.56
PGSC0003DMT400083452	Potato	cytosol	10.36	69.37
PGSC0003DMT400006585	Potato	cytosol	70.12	68.02
Solyc03g061590.2.1	Tomato	cytosol	15.88	65.19
Os06t0622500-00	Rice	cytosol	32.03	62.63
GSMUA_Achr1P19740_001	Banana	cytosol	60.83	60.11
Zm00001d042523_P001	Maize	cytosol	56.93	56.32
KXG33895	Sorghum	cytosol	56.93	56.1
TraesCS7A01G398600.1	Wheat	cytosol	56.8	55.67
TraesCS7D01G392900.2	Wheat	cytosol	56.66	55.54
TraesCS7B01G299300.1	Wheat	cytosol, mitochondrion	53.84	55.4
HORVU7Hr1G093620.9	Barley	cytosol	54.1	53.39
Bra027173.1-P	Field mustard	cytosol	45.63	43.18
Bra033769.1-P	Field mustard	nucleus	14.54	18.69
Bra018081.1-P	Field mustard	cytosol	13.59	17.44

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.1	EnsemblPlantsGene:Bra039034	EnsemblPlants:Bra039034.1	EnsemblPlants:Bra039034.1-P	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005819	GO:GO:0005856	GO:GO:0007049	GO:GO:0007275
GO:GO:0007346	GO:GO:0008150	GO:GO:0009504	GO:GO:0009653	GO:GO:0009719	GO:GO:0009733
GO:GO:0009790	GO:GO:0009791	GO:GO:0009987	GO:GO:0010071	GO:GO:0030154	GO:GO:0048364
GO:GO:0048829	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:M4FD64	PFAM:PF00515
PFAM:PF12895	PFAM:PF13181	PFAM:PF13432	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR12558	PANTHER:PTHR12558:SF13	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI0002540F9C	SEG:seg	:	:

Description

AT2G20000 (E=0.0) HBT, CDC27b | HBT (HOBBIT); binding

Coordinates

chrA07:+:615771..620109

Molecular Weight (calculated)

82893.3 Da

IEP (calculated)

6.660

GRAVY (calculated)

-0.415

Length

743 amino acids

Sequence
(BLAST)

001: MEAMLVDCVR NSLSHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG THMAQSRYLF ALSCYQMDLL NEAESALSPL NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTL DPLLWAAYEE LCILGAAEEP SAVFGEAAAL SIQKQYMQQL PSSLGLNTYN DERNTTSAKN TSSEDYSPRQ
201: PKHTQGHGLK DISGNFHSHG LNGGVSNMSF YNTPSPVAAQ LSGMAPPPLF RNFQPAVPNQ NSLTTDNSPK STVNSTIQAP APRRKFVDEG KLRKISGRLF
301: SDSGPRRSSR LSADSGANTN ASVATVSGNG NNTSKYLGGS KLGSLGLRSV TLRKGNSWAN ENMDEGVRGE SFDDSRPNTA STTASMASSD AKSCDQEDEI
401: MSQRITIGIS EILSLLRTLG EGCRLSYMYK CQEALDTYMK LPHKHYNTGW VLSQVGKAHF ELIDYLEAEK AFRLARQASP YSLEGMDIYS TVLYHLKEDM
501: KLSYLAQELI STDRLAPQSW CAMGNCYSLQ KDHETALKNF LRAVQLNPRF AYAHTLCGHE YATLEDFENG MKSYQNALRV DTRHYNAWYG LGMIYLRQEK
601: LEFSEHHFRM AFLINPSSSV IMSYLGTALH ALKRSEEALE IMEQAILADR KNPLPMYQKA NILVCLERLD EALEVLEELK EYAPSESSVY ALMGRIYKRR
701: NMHDKAMLHF GLALDMKPPA TDVAAIKAAM EKLHVPDEID ESP

Best Arabidopsis Sequence Match ( AT2G20000.1 )
(BLAST)

001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP

Arabidopsis Description

CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.