Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG33895 | Sorghum | cytosol | 95.21 | 94.83 |
| Os06t0622500-00 | Rice | cytosol | 44.47 | 87.89 |
| TraesCS7A01G398600.1 | Wheat | cytosol | 86.42 | 85.62 |
| TraesCS7D01G392900.2 | Wheat | cytosol | 86.28 | 85.49 |
| TraesCS7B01G299300.1 | Wheat | cytosol, mitochondrion | 80.69 | 83.93 |
| HORVU7Hr1G093620.9 | Barley | cytosol | 81.89 | 81.67 |
| KRH41728 | Soybean | extracellular, vacuole | 3.99 | 63.83 |
| GSMUA_Achr1P19740_001 | Banana | cytosol | 63.25 | 63.16 |
| Solyc03g061590.2.1 | Tomato | cytosol | 14.51 | 60.22 |
| VIT_11s0016g03260.t01 | Wine grape | cytosol | 59.39 | 58.61 |
| Bra039034.1-P | Field mustard | cytosol | 56.32 | 56.93 |
| CDY35917 | Canola | cytosol | 56.32 | 56.93 |
| CDY40468 | Canola | cytosol | 56.32 | 56.85 |
| KRH01476 | Soybean | cytosol | 56.99 | 56.61 |
| AT2G20000.1 | Thale cress | cytosol | 55.39 | 55.91 |
| PGSC0003DMT400083452 | Potato | cytosol | 8.12 | 54.95 |
| KRH18292 | Soybean | nucleus | 55.13 | 54.69 |
| KRG93804 | Soybean | cytosol | 54.99 | 54.56 |
| PGSC0003DMT400006585 | Potato | cytosol | 54.86 | 53.79 |
| Solyc03g061600.2.1 | Tomato | endoplasmic reticulum | 42.08 | 48.54 |
| CDY35918 | Canola | cytosol | 15.58 | 47.18 |
| CDY30158 | Canola | cytosol | 44.74 | 47.06 |
| CDX97740 | Canola | cytosol | 44.61 | 46.98 |
| AT3G16320.1 | Thale cress | cytosol | 45.54 | 46.98 |
| Bra027173.1-P | Field mustard | cytosol | 44.61 | 42.68 |
| Zm00001d017475_P002 | Maize | cytosol | 15.71 | 19.7 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:100192791 | MapMan:13.3.4.1.1.2.1 | UniProt:A0A1D6N4S9 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | ProteinID:ONM35677.1 | PFAM:PF00515 | PFAM:PF12895 | PFAM:PF13181 |
| PFAM:PF13374 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF13 | SMART:SM00028 |
| SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI0004DEBD98 |
| EnsemblPlantsGene:Zm00001d042523 | EnsemblPlants:Zm00001d042523_P001 | EnsemblPlants:Zm00001d042523_T001 | SEG:seg | : | : |
Description
Cell division cycle protein 27 homolog B
Coordinates
chr3:+:170587916..170598940
Molecular Weight (calculated)
85090.7 Da
IEP (calculated)
6.808
GRAVY (calculated)
-0.334
Length
751 amino acids
Sequence
(BLAST)
(BLAST)
001: METLMVDRVH SSLRLFMYRN AIFLCERLCA QFPSETNVQL LATCYLHNNQ PYAAYHVLKG KKLPESRYLF ATSCFRMNLL REAEEILCPV NEPNMEVPSG
101: ATGHYLLGVI YRCTGRISAA AEQFTQALTL DPLLWAAYEE LCILGIAEDT DECFSESTAL RLQQEHTSTS TLVKSNFANE NRVLSSSVSA SFGDIIPKQI
201: KQLHANNITE VSGYPHVRPT ALHVQNSSTS NVSQFDTPSP AAAQTSIMPP PLFRNVHAYQ NTISGDAPTK QKANGVSQPL RRKYMDEARL KKVSGRLFNS
301: DAMPRRSQRL KDTTTNSNTS QIGGNGTDHL SGKLRVNSST QSKLCSTAIR SVQVRKGKPR ATENFDEGSR YEVIDEMWTD NMSGTSSSVS TADGRSFEQD
401: RAERILLQDS KVALGIRELL GLFRTLGEGF RLSCLFKCQE ALEVYRKLPE SQFNTGWVLC QVGKAYFELV DYLEADHYFE LAHRLSPCTL DGMDIYSTVL
501: YHLNEEMRLS YLAQELISID RLSPQAWCAV GNCFALRKDH ETALKNFQRS VQLDSRFAYA HTLCGHEYSA LEDYENSIKF YRCALQVDER HYNAWYGLGV
601: VYLRQEKFEF AEHHFRRAFQ INPRSSVLMC YLGMALHSLK RNEEALEMME KAIAADKKNP LPKYQKSLIL LGLMKYEEAL DELERLKEIA PHESSMYALM
701: GKIYKQLNIL DKAVFCFGIA LDLKPPAADL AIIKSAMEKV HLPDELMEDD L
101: ATGHYLLGVI YRCTGRISAA AEQFTQALTL DPLLWAAYEE LCILGIAEDT DECFSESTAL RLQQEHTSTS TLVKSNFANE NRVLSSSVSA SFGDIIPKQI
201: KQLHANNITE VSGYPHVRPT ALHVQNSSTS NVSQFDTPSP AAAQTSIMPP PLFRNVHAYQ NTISGDAPTK QKANGVSQPL RRKYMDEARL KKVSGRLFNS
301: DAMPRRSQRL KDTTTNSNTS QIGGNGTDHL SGKLRVNSST QSKLCSTAIR SVQVRKGKPR ATENFDEGSR YEVIDEMWTD NMSGTSSSVS TADGRSFEQD
401: RAERILLQDS KVALGIRELL GLFRTLGEGF RLSCLFKCQE ALEVYRKLPE SQFNTGWVLC QVGKAYFELV DYLEADHYFE LAHRLSPCTL DGMDIYSTVL
501: YHLNEEMRLS YLAQELISID RLSPQAWCAV GNCFALRKDH ETALKNFQRS VQLDSRFAYA HTLCGHEYSA LEDYENSIKF YRCALQVDER HYNAWYGLGV
601: VYLRQEKFEF AEHHFRRAFQ INPRSSVLMC YLGMALHSLK RNEEALEMME KAIAADKKNP LPKYQKSLIL LGLMKYEEAL DELERLKEIA PHESSMYALM
701: GKIYKQLNIL DKAVFCFGIA LDLKPPAADL AIIKSAMEKV HLPDELMEDD L
001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
Arabidopsis Description
CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.