CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41728	Soybean	extracellular, vacuole	5.42	87.23
KRG93804	Soybean	cytosol	81.75	81.64
KRH18292	Soybean	nucleus	81.61	81.51
VIT_11s0016g03260.t01	Wine grape	cytosol	75.79	75.3
PGSC0003DMT400006585	Potato	cytosol	72.09	71.15
PGSC0003DMT400083452	Potato	cytosol	10.32	70.27
Os06t0622500-00	Rice	cytosol	31.48	62.63
GSMUA_Achr1P19740_001	Banana	cytosol	62.17	62.5
KXG33895	Sorghum	cytosol	57.01	57.16
Zm00001d042523_P001	Maize	cytosol	56.61	56.99
TraesCS7A01G398600.1	Wheat	cytosol	57.01	56.86
TraesCS7D01G392900.2	Wheat	cytosol	56.88	56.73
TraesCS7B01G299300.1	Wheat	cytosol, mitochondrion	54.1	56.65
HORVU7Hr1G093620.9	Barley	cytosol	54.1	54.32
KRH27971	Soybean	nucleus	13.36	17.5
KRH77487	Soybean	nucleus	13.36	17.47
KRH24006	Soybean	cytosol	12.17	15.62
KRH29310	Soybean	cytosol	3.17	7.5

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100802544	MapMan:13.3.4.1.1.2.1	EMBL:ACUP02011515	EnsemblPlantsGene:GLYMA_18G279500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1N4V8	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH01476	ProteinID:KRH01476	ProteinID:KRH01476.1	PFAM:PF00515	PFAM:PF12895	PFAM:PF13181
PFAM:PF13432	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF13
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat
UniParc:UPI000233EFAF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:56042606..56052443

Molecular Weight (calculated)

83988.1 Da

IEP (calculated)

6.978

GRAVY (calculated)

-0.282

Length

756 amino acids

Sequence
(BLAST)

001: MEAILVDCVQ KSLRHFMHAN AIFLCQRLCA EFPTETNLQL LAGCYLQNNQ AYCAYHILKG AQMAQSRYLF AISCFQMDLL SEAEAALCPV NEPSVEVPNG
101: AAGHYLLGLI YRYTDRRKSA IHNFKQALSM DPLMWAAYEE LCILGAAEDA TAVFGEAAAL CIQKQYLHCT TSPKLHSSAE DCNIVDTRHS VSEDTSPRQL
201: KLMQGMKDFP GNHHGASILG GTAQPNNSGL SNISFYNTPS PMAAQLSGVA PPPLCRNVQP NGQNLSSLNA DSSPKSTVNS TIQAPRRKFV DEGKLRKISG
301: RLFSDSGSRR SSRLSSDASV NANANATVVS GNGTNNSSKY LGGSKLSTMA FRSMAVRKGQ SWANENADEG IHNDVLDDSR LNVTSTTSSS SPTMEAKSYE
401: QKAANFPIGG QIVSGSKVIS GASEILTLLR IFGEGCRLAY LYRCQDALDT YMKLPHKHYS TGWVLSQVGK VYFELVDYLE AEQAFGLAHQ ITPYSLEGMD
501: VYSTVLYHLK EDMKLSYLAQ ELVSTDRLAP QSWCAMGNCY SLQKDHETAL KNFQRAVQLN PRFAYAHTLC GHEYVALEDF ENGIKCYQSA LTVDARHYNA
601: WYGLGMVYLR QEKFEFSEHH FRMAFHINPR SSVIMSYLGT ALHALKRSEE ALMVMEKAIL ADKKNPLPMY QKANILMSLE KFDEALEVLE ELKEYAPRES
701: SVYALMGRIY KRRNMHERAM LHYGISLDLK PSATDAAAIK AAIEKLHVPD EMEDNL

Best Arabidopsis Sequence Match ( AT2G20000.1 )
(BLAST)

001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP

Arabidopsis Description

CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.