Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d047979_P005 | Maize | cytosol, mitochondrion, nucleus, plastid | 88.44 | 88.29 |
| EER95202 | Sorghum | nucleus | 86.39 | 87.74 |
| Os03t0236966-00 | Rice | cytosol | 80.61 | 81.87 |
| TraesCS4A01G075000.1 | Wheat | plastid | 80.27 | 80.96 |
| TraesCS4D01G232400.1 | Wheat | plastid | 79.93 | 80.62 |
| TraesCS4B01G230900.1 | Wheat | plastid | 79.42 | 80.38 |
| HORVU4Hr1G064670.6 | Barley | cytosol, mitochondrion, nucleus, plastid | 80.61 | 74.65 |
| GSMUA_Achr8P30740_001 | Banana | cytosol | 66.5 | 72.27 |
| VIT_19s0014g01170.t01 | Wine grape | cytosol | 64.97 | 69.84 |
| Bra035062.1-P | Field mustard | cytosol | 63.1 | 68.2 |
| CDX87437 | Canola | cytosol | 63.1 | 68.2 |
| CDX88475 | Canola | cytosol | 62.93 | 68.01 |
| Solyc12g014320.1.1 | Tomato | cytosol | 63.61 | 67.88 |
| AT1G78770.1 | Thale cress | cytosol | 62.59 | 67.77 |
| CDY10563 | Canola | cytosol | 47.96 | 66.98 |
| KRH55075 | Soybean | cytosol | 61.73 | 66.61 |
| KRH26168 | Soybean | cytosol | 61.39 | 66.0 |
Protein Annotations
| MapMan:13.3.4.1.1.2.2 | UniProt:A0A1D6JVE9 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR011990 |
| InterPro:IPR013026 | InterPro:IPR019734 | ProteinID:ONL95775.1 | PFAM:PF00515 | PFAM:PF07720 | PFAM:PF12895 |
| PFAM:PF13181 | PFAM:PF13432 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF9 |
| SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-3 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 |
| InterPro:TPR_repeat | UniParc:UPI000844A628 | EnsemblPlantsGene:Zm00001d028358 | EnsemblPlants:Zm00001d028358_P003 | EnsemblPlants:Zm00001d028358_T003 | SEG:seg |
Description
Anaphase-promoting complex subunit 6
Coordinates
chr1:+:31888102..31908777
Molecular Weight (calculated)
67364.5 Da
IEP (calculated)
6.905
GRAVY (calculated)
-0.347
Length
588 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNSNFGFPR VPPTSSAAAA AAEPSSKRRR IGETTDPPSE MREEALERLR GVVRDSAGKH LYTSAIFLAD KVAAATGDPG DVYMLAQALF LGRQFRHALH
101: LLNNSRLLRD LRFRFLAAKC LEELKEWHQC LLMLGDAKVD EHGNVLDHDD DSDIYFDKDA EDHEINIKSA LCFLRGKAYE ALDNRDLARQ WYKAAVKADP
201: LCYEVGRTVT QWQYYSFYEK KNMQLLNVIH LYMFQALERL VDNYMLTCEE GNIKHEKEYL VEAKFKKLEE EACNILSSSS GETMKNNIDV LVCKAEYYHQ
301: SGEYQKCFKL TSSLLERDPF HLKCTLVHLA TAMELGHSND LYLLACNLVK DYPEKALSWF AVGCYYYCIK KYDQARRYFG KATGLDGTFP PAWIGTGIAY
401: AAQEEGDQAM AAFRTAARLF PGCHLPTLYM GMQYVRMHNF KLAEQFFTQA KSICPSDPLI YNELGVVAYN MKEYRKAVQL FELTLDHTSS SLNEMWEPTL
501: VNLGHALRKL KEYQKAVSCY EKALTFPTKS LSAFAGLAYS YHLMDNFEAA INYYHKALWL KPDDQFCTEM LTYALESICQ STARRRPS
101: LLNNSRLLRD LRFRFLAAKC LEELKEWHQC LLMLGDAKVD EHGNVLDHDD DSDIYFDKDA EDHEINIKSA LCFLRGKAYE ALDNRDLARQ WYKAAVKADP
201: LCYEVGRTVT QWQYYSFYEK KNMQLLNVIH LYMFQALERL VDNYMLTCEE GNIKHEKEYL VEAKFKKLEE EACNILSSSS GETMKNNIDV LVCKAEYYHQ
301: SGEYQKCFKL TSSLLERDPF HLKCTLVHLA TAMELGHSND LYLLACNLVK DYPEKALSWF AVGCYYYCIK KYDQARRYFG KATGLDGTFP PAWIGTGIAY
401: AAQEEGDQAM AAFRTAARLF PGCHLPTLYM GMQYVRMHNF KLAEQFFTQA KSICPSDPLI YNELGVVAYN MKEYRKAVQL FELTLDHTSS SLNEMWEPTL
501: VNLGHALRKL KEYQKAVSCY EKALTFPTKS LSAFAGLAYS YHLMDNFEAA INYYHKALWL KPDDQFCTEM LTYALESICQ STARRRPS
001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC
Arabidopsis Description
APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.