CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73040
CDX90700
CDX96131
CDX96508
CDY05032
CDY36228

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	CDX96131	AT1G66750.1	20706207
AT1G78770.1	CDY36228	AT1G66750.1	20706207
AT1G78770.1	CDX73040	AT1G74030.1	20706207
AT1G78770.1	CDX96508	AT1G74030.1	20706207
AT1G78770.1	CDX90700	AT4G08900.1	20706207
AT1G78770.1	CDY05032	AT4G08900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035062.1-P	Field mustard	cytosol	98.57	76.29
CDX87437	Canola	cytosol	98.57	76.29
CDX88475	Canola	cytosol	98.57	76.29
AT1G78770.1	Thale cress	cytosol	92.87	72.01
VIT_19s0014g01170.t01	Wine grape	cytosol	79.81	61.43
KRH55075	Soybean	cytosol	78.38	60.55
Solyc12g014320.1.1	Tomato	cytosol	78.15	59.71
KRH26168	Soybean	cytosol	77.2	59.41
GSMUA_Achr8P30740_001	Banana	cytosol	71.02	55.27
Os03t0236966-00	Rice	cytosol	72.21	52.5
EER95202	Sorghum	nucleus	72.21	52.5
TraesCS4A01G075000.1	Wheat	plastid	71.5	51.63
TraesCS4B01G230900.1	Wheat	plastid	71.02	51.46
TraesCS4D01G232400.1	Wheat	plastid	71.02	51.29
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	70.78	50.59
Zm00001d028358_P003	Maize	mitochondrion, nucleus	66.98	47.96
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	71.26	47.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.2	UniProt:A0A078FER8	EnsemblPlants:CDY10563	ProteinID:CDY10563	ProteinID:CDY10563.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00032523001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13181	PFAM:PF13424	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558
PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452	SUPFAM:SSF81901	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_repeat	UniParc:UPI0004EDE263	SEG:seg	:	:	:

Description

BnaC03g70510DBnaC03g70510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FER8]

Coordinates

chrLK032004:-:372307..375533

Molecular Weight (calculated)

47948.9 Da

IEP (calculated)

6.500

GRAVY (calculated)

-0.275

Length

421 amino acids

Sequence
(BLAST)

001: MLGDAKVDED GNVYDAKDGN LIYFDKDGED REINISSAIC FLRGKAYGAL QNRSQARQWY KAAIKADPLC YEALECLIES HMLTSEEESN LLSSLQFSPE
101: DGWLSSFYSC LIKKYDKEST VEARFKKLEN EISGCVSGSS MISTLVNNTD LLACKAEYYH QCCQYQKCFE LTSGLLEKDP FHLKCTLVHL AAAKELGALS
201: WFPVGCYYYC IKKYAEARRY FSKATNIDGS FSPAWIGFGN SFAAQEEGDQ AMSAYRTAAR LFPGCHLPTL YTGMEYMRTH SYKLADQFFM QAKAICPSDP
301: LVYNELRVVS YHMKEYGKAV RWFEKTLAHI PSVLTEIWEP TVVNLAHAFR KLRKYREAIS YYERALTLST KSLSTYSGLA YTYHLQGNFS AAISHYHKAL
401: WLKPDDQFCT EMLNVALLDE C

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.