Factsheet for GSMUA_Achr8P30740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P09020_001
GSMUA_Achr5P05330_001
GSMUA_Achr5P14460_001
GSMUA_Achr9P14590_001
GSMUA_Achr9P17590_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G78770.1	GSMUA_Achr3P09020_001	AT1G66750.1	20706207
AT1G78770.1	GSMUA_Achr9P17590_001	AT1G66750.1	20706207
AT1G78770.1	GSMUA_Achr5P05330_001	AT1G74030.1	20706207
AT1G78770.1	GSMUA_Achr9P14590_001	AT1G74030.1	20706207
AT1G78770.1	GSMUA_Achr5P14460_001	AT4G08900.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0014g01170.t01	Wine grape	cytosol	77.45	76.6
KRH55075	Soybean	cytosol	75.42	74.86
KRH26168	Soybean	cytosol	75.42	74.59
Solyc12g014320.1.1	Tomato	cytosol	75.79	74.41
AT1G78770.1	Thale cress	cytosol	73.75	73.48
Bra035062.1-P	Field mustard	cytosol	73.57	73.16
CDX88475	Canola	cytosol	73.57	73.16
CDX87437	Canola	cytosol	73.57	73.16
Os03t0236966-00	Rice	cytosol	76.53	71.5
CDY10563	Canola	cytosol	55.27	71.02
TraesCS4A01G075000.1	Wheat	plastid	76.16	70.67
TraesCS4B01G230900.1	Wheat	plastid	75.79	70.57
TraesCS4D01G232400.1	Wheat	plastid	75.97	70.5
EER95202	Sorghum	nucleus	75.05	70.12
Zm00001d047979_P005	Maize	cytosol, mitochondrion, nucleus, plastid	75.05	68.93
Zm00001d028358_P003	Maize	mitochondrion, nucleus	72.27	66.5
HORVU4Hr1G064670.6	Barley	cytosol, mitochondrion, nucleus, plastid	76.34	65.04

Protein Annotations

MapMan:13.3.4.1.1.2.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006259
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0010087
GO:GO:0032875	EnsemblPlantsGene:GSMUA_Achr8G30740_001	EnsemblPlants:GSMUA_Achr8P30740_001	EnsemblPlants:GSMUA_Achr8T30740_001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	UniProt:M0TV26	PFAM:PF00515	PFAM:PF12895	PFAM:PF13181	PFscan:PS50005
PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF9	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sf	InterPro:TPR_1	InterPro:TPR_repeat	UniParc:UPI00029696F4	SEG:seg	:

Description

Anaphase-promoting complex subunit 6 [Source:GMGC_GENE;Acc:GSMUA_Achr8G30740_001]

Coordinates

chr8:-:32670104..32687544

Molecular Weight (calculated)

61893.8 Da

IEP (calculated)

6.501

GRAVY (calculated)

-0.255

Length

541 amino acids

Sequence
(BLAST)

001: MREEAVETLR GVVRDCVSKH LYSSAIFFAD KVVAATGDPA DIYMQAQALF LGRQYRRALH LLNSSQIVLR DLRFRYLAAK CLEELKEWHQ CLAMLGDAKV
101: DEHGNVLSQN DGTAMYLDKD TEDHEINITS AICFLRGKAY EALENRAQAR QWYKAAVKAD ALCYEALECL VDNYMLTCEE ESSLLSSLQF GKDDKWLSSF
201: YSCLVKKHVK EHVVEAKFRD LERETSGVAS SNSSFSQTLK NNTDLLARRA EYYYQSGEYQ RCFELTSMVL ERDPFHLKCT LVHLVASMEL GRSNDLYLMA
301: CNLVKDHPQK ALSWFSVGCY YFCIKKYDQS RRYFCKATTI DGSFPPAWVG IGNAYAAQSE GDQAMAAFRS GARLFPGCHL PALYIGMEYM QTHNYKLAEQ
401: FFLQAKKICP SDPLVYNELG VVAYHMKEYQ KGVQWFEMTL DCVSSSLSEM WEPTLVNLAH ALRKLKMFQK AISCYEKALA VSTQNFSAFA GLAYTYHLQD
501: NFDAAITYYH KALWLDPNDQ FCTEMLTLAL EDDCRGVDRR K

Best Arabidopsis Sequence Match ( AT1G78770.1 )
(BLAST)

001: MREEEIEKIR GVVRDCVSKH LYSSAIFFAD KVAALTNDPS DIYMQAQALF LGRHYRRAFH LLNASKIVLR DLRFRYLAAK CLEELKEWDQ CLLMLGDAKV
101: DDDGIVYDAK DGNVIDFDKD GEDREINISS AICFLRGKAY GALQNRSQAR QWYKAAIKAD PLCYEALECL IESHMLTSEE ESSLLSSLQF SPEDGWLSSF
201: YSCLIKKYDK ESTVELKFKK LENETSGSVS GSSMITLANN TDLLACKAEY YHQCCEYQKC FELTAALLEK DPFHLKCTLV HLAAAMELGN SNELYLMACN
301: LVKDYPSKAL SWFAVGCYYY CIKKYAEARR YFSKATGIDG SFSPARIGYG NSFAAQEEGD QAMSAYRTAA RLFPGCHLPT LYIGMEYMRT HSYKLADQFF
401: MQAKAICPSD PLVYNELGVV AYHMKEYGKA VRWFEKTLAH IPSALTESWE PTVVNLAHAY RKLRKDREAI SYYERALTLS TKSLSTYSGL AYTYHLQGNF
501: SAAISYYHKA LWLKPDDQFC TEMLNVALMD ECQNGVDSKV ELC

Arabidopsis Description

APC6Anaphase-promoting complex subunit 6 [Source:UniProtKB/Swiss-Prot;Acc:B3DNN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.