CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY04835
CDY20922
CDY25160
CDY29224
CDY30292
CDY30835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16320.1	CDY04835	AT2G04660.1	17944809
AT3G16320.1	CDY30292	AT2G04660.1	17944809
AT3G16320.1	CDY30835	AT2G04660.1	17944809
AT3G16320.1	CDY20922	AT2G18290.1	17944809
AT3G16320.1	CDY25160	AT2G18290.1	17944809
AT3G16320.1	CDY29224	AT2G18290.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97740	Canola	cytosol	95.52	95.65
Bra027173.1-P	Field mustard	cytosol	87.96	80.0
AT3G16320.1	Thale cress	cytosol	80.39	78.85
Os06t0622500-00	Rice	cytosol	28.99	54.47
GSMUA_Achr1P19740_001	Banana	cytosol	48.74	46.28
CDY40468	Canola	cytosol	48.18	46.24
CDY35917	Canola	cytosol	48.04	46.16
TraesCS7B01G299300.1	Wheat	cytosol, mitochondrion	46.22	45.71
Zm00001d042523_P001	Maize	cytosol	47.06	44.74
KXG33895	Sorghum	cytosol	47.2	44.7
TraesCS7A01G398600.1	Wheat	cytosol	47.34	44.59
TraesCS7D01G392900.2	Wheat	cytosol	47.2	44.46
CDY35918	Canola	cytosol	14.85	42.74
HORVU7Hr1G093620.9	Barley	cytosol	44.12	41.83
CDY58069	Canola	nucleus	10.22	16.37
CDY44976	Canola	cytosol	10.5	14.85
CDY58070	Canola	cytosol	10.08	14.55
CDY36901	Canola	cytosol	9.94	14.17
CDY70805	Canola	nucleus	4.34	10.3

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.1	UniProt:A0A078GZZ9	EnsemblPlants:CDY30158	ProteinID:CDY30158	ProteinID:CDY30158.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00044737001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF07719	PFAM:PF12895	PFAM:PF13181	PFscan:PS50005	PFscan:PS50293
PANTHER:PTHR12558	PANTHER:PTHR12558:SF13	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf
InterPro:TPR_2	InterPro:TPR_repeat	UniParc:UPI0004EDED92	SEG:seg	:	:

Description

BnaC05g37040DBnaC05g37040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GZZ9]

Coordinates

chrLK032249:+:403687..407949

Molecular Weight (calculated)

80467.3 Da

IEP (calculated)

6.071

GRAVY (calculated)

-0.403

Length

714 amino acids

Sequence
(BLAST)

001: METLLANCVE KNLTQFMFSN AIFLCERLLA QFPSEVNLQL LARCYLSNSQ PYSAYYILKG SKTPQSRYLF AFSCFKLDLL GEAESALLST EESVPGGAAG
101: HYLLGLIYRY AGRKNSSIQQ FRMALSCDPL CWEAYAELCS LGAAEDASMV FGNVAAQRLQ KTNVSQRINF SEGETRDHLI DSDKVSKDTS VWQTEHVSGE
201: NQQDLKVKQL GAEIPPDSDN QCNVSSHTNG WDLKTPSPVL TQVLDAPPPM LYKNMRRPEV EGLMSVHGES RRKFMSEEES SEAPEESGRR RSARIAARRK
301: IPLFHSYGKD SHVLHHSPSE SNGVPSLSSM IGKCRIQSSK EATTSGQSIG DTGSSVDDEQ NSNPRGSSPD PFSLMSGVSE VLNLLKILGD GHRHLLMFNC
401: QEALLVYQKL SEKQYNTHWV LMQVGKAYVE LQDYFHADSV FTLAHQKSPY ALEGMDTYST VLYHLKEEMR LGYLAQELIS VDRISPESWC ASGNYYSLCK
501: DHEAALKMFR RAIQLNDRFT YAHTLCGHEL AALEDFEEAE RCYRKALSID TRHYNAWYGL GMTYLHQEKF EFAQHQFQLA LQINPRSSVI MCYFGIALHE
601: SKRNDEALKM IEKAIVADAR NPLSKYFKAN ILADLGDYHR ALEVLEELRD SAPHESSVHA LLGKIYKEVK LYDKAVLNFG TALDLNPSPS DTVKIKAFME
701: RLAVPNELET EEDL

Best Arabidopsis Sequence Match ( AT3G16320.2 )
(BLAST)

001: MMENLLANCV QKNLNHFMFT NAIFLCELLL AQFPSEVNLQ LLARCYLSNS QAYSAYYILK GSKTPQSRYL FAFSCFKLDL LGEAEAALLP CEDYAEEVPG
101: GAAGHYLLGL IYRYSGRKNC SIQQFRMALS FDPLCWEAYG ELCSLGAAEE ASTVFGNVAS QRLQKTCVEQ RISFSEGATI DQITDSDKAL KDTGLSQTEH
201: IPGENQQDLK IMQQPGDIPP NTDRQLSTNG WDLNTPSPVL LQVMDALPPL LLKNMRRPAV EGSLMSVHGV RVRRRNFFSE ELSAEAQEES GRRRSARIAA
301: RKKNPMSQSF GKDSHWLHLS PSESNYAPSL SSMIGKCRIQ SSKEATTSGQ SVSDIGSSVD DEEKSNPSES SPDRFSLISG ISEVLSLLKI LGDGHRHLHM
401: YKCQEALLAY QKLSQKQYNT HWVLMQVGKA YFELQDYFNA DSSFTLAHQK YPYALEGMDT YSTVLYHLKE EMRLGYLAQE LISVDRLSPE SWCAVGNCYS
501: LRKDHDTALK MFQRAIQLNE RFTYAHTLCG HEFAALEEFE DAERCYRKAL GIDTRHYNAW YGLGMTYLRQ EKFEFAQHQF QLALQINPRS SVIMCYYGIA
601: LHESKRNDEA LMMMEKAVLT DAKNPLPKYY KAHILTSLGD YHKAQKVLEE LKECAPQESS VHASLGKIYN QLKQYDKAVL HFGIALDLSP SPSDAVKIKA
701: YMERLILPDE LVTEENL

Arabidopsis Description

CDC27aTetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT3G16320]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.