Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039034.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY40468 | Canola | cytosol | 98.52 | 98.39 |
| CDY35918 | Canola | cytosol | 29.88 | 89.52 |
| AT2G20000.1 | Thale cress | cytosol | 89.37 | 89.25 |
| KRH41728 | Soybean | extracellular, vacuole | 4.58 | 72.34 |
| VIT_11s0016g03260.t01 | Wine grape | cytosol | 72.27 | 70.56 |
| PGSC0003DMT400083452 | Potato | cytosol | 10.36 | 69.37 |
| PGSC0003DMT400006585 | Potato | cytosol | 70.12 | 68.02 |
| Os06t0622500-00 | Rice | cytosol | 32.03 | 62.63 |
| GSMUA_Achr1P19740_001 | Banana | cytosol | 60.83 | 60.11 |
| Zm00001d042523_P001 | Maize | cytosol | 56.93 | 56.32 |
| KXG33895 | Sorghum | cytosol | 56.93 | 56.1 |
| TraesCS7A01G398600.1 | Wheat | cytosol | 56.8 | 55.67 |
| TraesCS7D01G392900.2 | Wheat | cytosol | 56.66 | 55.54 |
| TraesCS7B01G299300.1 | Wheat | cytosol, mitochondrion | 53.84 | 55.4 |
| HORVU7Hr1G093620.9 | Barley | cytosol | 54.1 | 53.39 |
| CDX97740 | Canola | cytosol | 46.16 | 48.11 |
| CDY30158 | Canola | cytosol | 46.16 | 48.04 |
| CDY58069 | Canola | nucleus | 9.83 | 16.37 |
| CDY58070 | Canola | cytosol | 10.36 | 15.56 |
| CDY44976 | Canola | cytosol | 9.69 | 14.26 |
| CDY36901 | Canola | cytosol | 9.42 | 13.97 |
| CDY70805 | Canola | nucleus | 4.17 | 10.3 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.1 | UniProt:A0A078HDM4 | EnsemblPlants:CDY35917 | ProteinID:CDY35917 | ProteinID:CDY35917.1 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00059466001 | InterPro:IPR011990 | InterPro:IPR013026 |
| InterPro:IPR019734 | PFAM:PF00515 | PFAM:PF12895 | PFAM:PF13181 | PFAM:PF13432 | PFAM:PF14559 |
| PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF13 | SMART:SM00028 | SUPFAM:SSF48452 |
| InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_1 | InterPro:TPR_repeat | UniParc:UPI0002540F9C | SEG:seg |
Description
BnaA07g00700DBnaA07g00700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDM4]
Coordinates
chrLK032363:-:325406..330111
Molecular Weight (calculated)
82893.3 Da
IEP (calculated)
6.660
GRAVY (calculated)
-0.415
Length
743 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAMLVDCVR NSLSHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG THMAQSRYLF ALSCYQMDLL NEAESALSPL NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTL DPLLWAAYEE LCILGAAEEP SAVFGEAAAL SIQKQYMQQL PSSLGLNTYN DERNTTSAKN TSSEDYSPRQ
201: PKHTQGHGLK DISGNFHSHG LNGGVSNMSF YNTPSPVAAQ LSGMAPPPLF RNFQPAVPNQ NSLTTDNSPK STVNSTIQAP APRRKFVDEG KLRKISGRLF
301: SDSGPRRSSR LSADSGANTN ASVATVSGNG NNTSKYLGGS KLGSLGLRSV TLRKGNSWAN ENMDEGVRGE SFDDSRPNTA STTASMASSD AKSCDQEDEI
401: MSQRITIGIS EILSLLRTLG EGCRLSYMYK CQEALDTYMK LPHKHYNTGW VLSQVGKAHF ELIDYLEAEK AFRLARQASP YSLEGMDIYS TVLYHLKEDM
501: KLSYLAQELI STDRLAPQSW CAMGNCYSLQ KDHETALKNF LRAVQLNPRF AYAHTLCGHE YATLEDFENG MKSYQNALRV DTRHYNAWYG LGMIYLRQEK
601: LEFSEHHFRM AFLINPSSSV IMSYLGTALH ALKRSEEALE IMEQAILADR KNPLPMYQKA NILVCLERLD EALEVLEELK EYAPSESSVY ALMGRIYKRR
701: NMHDKAMLHF GLALDMKPPA TDVAAIKAAM EKLHVPDEID ESP
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTL DPLLWAAYEE LCILGAAEEP SAVFGEAAAL SIQKQYMQQL PSSLGLNTYN DERNTTSAKN TSSEDYSPRQ
201: PKHTQGHGLK DISGNFHSHG LNGGVSNMSF YNTPSPVAAQ LSGMAPPPLF RNFQPAVPNQ NSLTTDNSPK STVNSTIQAP APRRKFVDEG KLRKISGRLF
301: SDSGPRRSSR LSADSGANTN ASVATVSGNG NNTSKYLGGS KLGSLGLRSV TLRKGNSWAN ENMDEGVRGE SFDDSRPNTA STTASMASSD AKSCDQEDEI
401: MSQRITIGIS EILSLLRTLG EGCRLSYMYK CQEALDTYMK LPHKHYNTGW VLSQVGKAHF ELIDYLEAEK AFRLARQASP YSLEGMDIYS TVLYHLKEDM
501: KLSYLAQELI STDRLAPQSW CAMGNCYSLQ KDHETALKNF LRAVQLNPRF AYAHTLCGHE YATLEDFENG MKSYQNALRV DTRHYNAWYG LGMIYLRQEK
601: LEFSEHHFRM AFLINPSSSV IMSYLGTALH ALKRSEEALE IMEQAILADR KNPLPMYQKA NILVCLERLD EALEVLEELK EYAPSESSVY ALMGRIYKRR
701: NMHDKAMLHF GLALDMKPPA TDVAAIKAAM EKLHVPDEID ESP
001: MEAMLVDCVN NSLRHFVYKN AIFMCERLCA EFPSEVNLQL LATSYLQNNQ AYSAYHLLKG TQMAQSRYLF ALSCFQMDLL NEAESALCPV NEPGAEIPNG
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
101: AAGHYLLGLI YKYTDRRKNA AQQFKQSLTI DPLLWAAYEE LCILGAAEEA TAVFGETAAL SIQKQYMQQL STSLGLNTYN EERNSTSTKN TSSEDYSPRQ
201: SKHTQSHGLK DISGNFHSHG VNGGVSNMSF YNTPSPVAAQ LSGIAPPPLF RNFQPAVANP NSLITDSSPK STVNSTLQAP RRKFVDEGKL RKISGRLFSD
301: SGPRRSSRLS ADSGANINSS VATVSGNVNN ASKYLGGSKL SSLALRSVTL RKGHSWANEN MDEGVRGEPF DDSRPNTAST TGSMASNDQE DETMSIGGIA
401: MSSQTITIGV SEILNLLRTL GEGCRLSYMY RCQEALDTYM KLPHKHYNTG WVLSQVGKAY FELIDYLEAE KAFRLARLAS PYCLEGMDIY STVLYHLKED
501: MKLSYLAQEL ISTDRLAPQS WCAMGNCYSL QKDHETALKN FLRAVQLNPR FAYAHTLCGH EYTTLEDFEN GMKSYQNALR VDTRHYNAWY GLGMIYLRQE
601: KLEFSEHHFR MAFLINPSSS VIMSYLGTSL HALKRSEEAL EIMEQAIVAD RKNPLPMYQK ANILVCLERL DEALEVLEEL KEYAPSESSV YALMGRIYKR
701: RNMHDKAMLH FGLALDMKPP ATDVAAIKAA MEKLHVPDEI DESP
Arabidopsis Description
CDC27BCell division cycle protein 27 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q8LGU6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.