Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDX71989 | |
| CDX74120 | |
| CDX74867 | |
| CDX76119 | |
| CDX77145 | |
| CDX79070 | |
| CDX80511 | |
| CDX80516 | |
| CDX80828 | |
| CDX82264 | |
| CDX82833 | |
| CDX87437 | |
| CDX88180 | |
| CDX88475 | |
| CDX96631 | endoplasmic reticulum |
| CDX98240 | |
| CDY04835 | |
| CDY05493 | |
| CDY06071 | |
| CDY06219 | |
| CDY06464 | |
| CDY06653 | |
| CDY08664 | |
| CDY09966 | |
| CDY10211 | |
| CDY10442 | |
| CDY10563 | |
| CDY12300 | |
| CDY14051 | |
| CDY18835 | |
| CDY19801 | |
| CDY20922 | |
| CDY22476 | |
| CDY24564 | |
| CDY25160 | |
| CDY25374 | |
| CDY29224 | |
| CDY29520 | endoplasmic reticulum |
| CDY30292 | |
| CDY30517 | |
| CDY30835 | |
| CDY31481 | endoplasmic reticulum |
| CDY33444 | |
| CDY33634 | endoplasmic reticulum |
| CDY34315 | |
| CDY35917 | |
| CDY36063 | |
| CDY36901 | |
| CDY37656 | |
| CDY40364 | |
| CDY40468 | |
| CDY42227 | |
| CDY44628 | |
| CDY44976 | |
| CDY47689 | |
| CDY47916 | |
| CDY49157 | |
| CDY49990 | |
| CDY50950 | |
| CDY53538 | |
| CDY54909 | |
| CDY55173 | |
| CDY55544 | |
| CDY58069 | |
| CDY58070 | |
| CDY65003 | |
| CDY70805 | |
| CDY71046 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90811 | Canola | nucleus | 96.92 | 97.13 |
| Bra000756.1-P | Field mustard | nucleus | 96.26 | 92.98 |
| CDY71065 | Canola | cytosol | 20.04 | 88.35 |
| CDX94473 | Canola | nucleus | 90.97 | 87.5 |
| CDX86737 | Canola | nucleus | 90.31 | 86.32 |
| AT4G11920.1 | Thale cress | nucleus | 84.8 | 81.05 |
| CDY10820 | Canola | nucleus, plastid | 76.65 | 74.04 |
| CDY41283 | Canola | nucleus, plastid | 76.65 | 73.89 |
| VIT_02s0025g04680.t01 | Wine grape | cytosol, nucleus, plastid | 70.7 | 71.02 |
| KRH57275 | Soybean | nucleus | 70.26 | 69.5 |
| CDX94136 | Canola | nucleus, plastid | 57.49 | 68.32 |
| KRH77460 | Soybean | nucleus, plastid | 68.06 | 67.32 |
| GSMUA_Achr11P... | Banana | plastid | 68.5 | 63.99 |
| KRH04001 | Soybean | mitochondrion | 71.37 | 61.6 |
| GSMUA_Achr11P... | Banana | plastid | 64.1 | 59.27 |
| KRH27985 | Soybean | nucleus, plastid | 59.03 | 59.03 |
| TraesCS4D01G341200.1 | Wheat | nucleus, plastid | 66.52 | 58.98 |
| TraesCS4B01G346200.2 | Wheat | nucleus, plastid | 66.52 | 58.87 |
| Zm00001d027430_P001 | Maize | plastid | 66.52 | 58.75 |
| Zm00001d048472_P001 | Maize | nucleus, plastid | 66.74 | 58.27 |
| Os03t0123300-01 | Rice | plastid | 66.96 | 58.13 |
| CDY71640 | Canola | nucleus, plastid | 30.4 | 57.5 |
| TraesCS1B01G166800.1 | Wheat | cytosol | 52.64 | 56.5 |
| TraesCS7B01G353500.1 | Wheat | plastid | 50.22 | 56.3 |
| CDX70523 | Canola | plastid | 57.93 | 56.2 |
| CDX78541 | Canola | plastid | 57.71 | 55.98 |
| HORVU4Hr1G084710.1 | Barley | cytosol, mitochondrion | 66.52 | 53.64 |
| CDY59111 | Canola | nucleus | 23.13 | 48.61 |
| CDY26774 | Canola | mitochondrion | 11.45 | 47.27 |
| CDY04804 | Canola | mitochondrion, plastid | 15.86 | 45.0 |
| OQU93351 | Sorghum | nucleus | 67.62 | 44.11 |
| CDY71694 | Canola | nucleus | 15.42 | 40.46 |
| CDY28289 | Canola | cytosol, extracellular, mitochondrion, plastid | 17.18 | 40.41 |
| CDY13491 | Canola | cytosol | 32.16 | 39.67 |
| CDX75343 | Canola | nucleus | 30.62 | 37.27 |
| CDY59110 | Canola | nucleus | 34.36 | 37.23 |
| CDY59109 | Canola | nucleus | 34.36 | 37.23 |
| CDY52543 | Canola | nucleus | 35.02 | 37.15 |
| CDX68960 | Canola | nucleus | 31.94 | 35.11 |
| CDY44519 | Canola | cytosol, nucleus | 34.14 | 29.87 |
| CDX98239 | Canola | nucleus | 7.71 | 26.12 |
| CDY46124 | Canola | cytosol | 29.96 | 21.94 |
| CDY28290 | Canola | cytosol, mitochondrion, nucleus | 6.83 | 21.23 |
| CDX75342 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:13.3.4.1.3 | Gene3D:2.130.10.10 | UniProt:A0A078IKJ6 | EnsemblPlants:CDY51550 | ProteinID:CDY51550 | ProteinID:CDY51550.1 |
| InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 | GO:GO:0051488 |
| GO:GO:0097027 | GO:GO:1904668 | EnsemblPlantsGene:GSBRNA2T00003728001 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF31 |
| SMART:SM00320 | SUPFAM:SSF50978 | UniParc:UPI0004EDEE36 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS |
| InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : |
Description
BnaC03g72960DBnaC03g72960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKJ6]
Coordinates
chrLK033005:-:34871..37514
Molecular Weight (calculated)
50205.1 Da
IEP (calculated)
9.194
GRAVY (calculated)
-0.490
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDEEDPSS SSSQLNLPPS MNRPTVSLET QRINRLIRSE HYHSPSKPIY SDRFIPSPSG SNFALFGLEP SPKKDGKEDG PGSYAGMLRT VLFGPETPEK
101: ADVVTGFSPS SRNIFRYKTE TQRPVNSFPP FGCDEGPSVS RSPVKSPRNI LKSAYKVLDA PALQDDFYLN LVDWSAQNVT KLCDLGGDES VCSVGWALRG
201: THLAIGTNSG TVEIWDALRC RRIRTMGGHR LRVGALAWSS SVLSSGSRDK KILQRDIRSQ EDHISKLTGH RSEVCGLKWS YDNRELASGG NDNKLLVWNQ
301: HSTKPVLRYC EHTAAVKAIA WSPHLHGLLA SGGGTADRCI RFWNTTTNTR LSCVDTNSQV CNLAWSKNVN ELVSTHGYSQ NQIIVWKYPT MSKLATLTGH
401: TFRVLYLAVS PDGQTIVTGA GDETLRFWNV FPSPKSQRRE SGIGALSFGR TTIR
101: ADVVTGFSPS SRNIFRYKTE TQRPVNSFPP FGCDEGPSVS RSPVKSPRNI LKSAYKVLDA PALQDDFYLN LVDWSAQNVT KLCDLGGDES VCSVGWALRG
201: THLAIGTNSG TVEIWDALRC RRIRTMGGHR LRVGALAWSS SVLSSGSRDK KILQRDIRSQ EDHISKLTGH RSEVCGLKWS YDNRELASGG NDNKLLVWNQ
301: HSTKPVLRYC EHTAAVKAIA WSPHLHGLLA SGGGTADRCI RFWNTTTNTR LSCVDTNSQV CNLAWSKNVN ELVSTHGYSQ NQIIVWKYPT MSKLATLTGH
401: TFRVLYLAVS PDGQTIVTGA GDETLRFWNV FPSPKSQRRE SGIGALSFGR TTIR
001: MEEDESTTPK KKSDSQLNLP PSMNRPTVSL ESRINRLIDS NHYHSPSKPI YSDRFIPSRS GSNFALFDLA SSSPNKKDGK EDGAGSYASL LKTALFGPVT
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR
101: PEKSDVVNGF SPSGNIFRFK TETQRSLNLY PPFDSDVVSG VSPSPVKSPR KILRSPYKVL DAPALQDDFY LNLVDWSAQN VLAVGLGNCV YLWNACSSKV
201: TKLCDLGVDE TVCSVGWALR GTHLAIGTSS GTVQIWDVLR CKNIRTMEGH RLRVGALAWS SSVLSSGSRD KSILQRDIRT QEDHVSKLKG HKSEICGLKW
301: SSDNRELASG GNDNKLFVWN QHSTQPVLRF CEHAAAVKAI AWSPHHFGLL ASGGGTADRC IRFWNTTTNT HLNCVDTNSQ VCNLVWSKNV NELVSTHGYS
401: QNQIIVWKYP TMSKLATLTG HSYRVLYLAV SPDGQTIVTG AGDETLRFWN VFPSPKSQSR ESEIGALSFG RTTIR
Arabidopsis Description
FZR1Protein FIZZY-RELATED 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.