Factsheet for VIT_02s0025g04680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 3
nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0181g00190.t01
VIT_00s0181g00210.t01
VIT_01s0026g02730.t01
VIT_02s0012g02000.t01
VIT_04s0008g05010.t01
VIT_04s0023g01940.t01
VIT_05s0020g01730.t01
VIT_06s0004g04340.t01
VIT_06s0061g00810.t01
VIT_07s0031g02330.t01
VIT_07s0130g00410.t01
VIT_07s0130g00490.t01
VIT_08s0007g07790.t01
VIT_08s0032g01040.t01
VIT_11s0016g03260.t01
VIT_12s0028g00720.t01
VIT_12s0028g00740.t01
VIT_13s0019g00640.t01
VIT_15s0021g02230.t01
VIT_17s0000g00200.t01
VIT_17s0000g08170.t01
VIT_17s0000g10250.t01
VIT_18s0001g14170.t01	endoplasmic reticulum
VIT_19s0014g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G11920.1	VIT_02s0012g02000.t01	AT1G06590.1	20706207
AT4G11920.1	VIT_12s0028g00720.t01	AT1G06590.1	20706207
AT4G11920.1	VIT_12s0028g00740.t01	AT1G06590.1	20706207
AT4G11920.1	VIT_18s0001g14170.t01	AT1G20610.1	20407024
AT4G11920.1	VIT_19s0014g01170.t01	AT1G78770.1	20706207
AT4G11920.1	VIT_01s0026g02730.t01	AT2G04660.1	20706207
AT4G11920.1	VIT_04s0023g01940.t01	AT2G18290.1	20706207
AT4G11920.1	VIT_11s0016g03260.t01	AT2G20000.1	17944809
AT4G11920.1	VIT_11s0016g03260.t01	AT2G20000.1	20706207
AT4G11920.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT4G11920.1	VIT_05s0020g01730.t01	AT2G39090.1	20706207
AT4G11920.1	VIT_08s0032g01040.t01	AT3G11760.1	20706207
AT4G11920.1	VIT_15s0021g02230.t01	AT3G20050.1	20706207
AT4G11920.1	VIT_07s0031g02330.t01	AT3G48150.1	20706207
AT4G11920.1	VIT_07s0130g00490.t01	AT3G48150.1	20706207
AT4G11920.1	VIT_08s0007g07790.t01	AT3G57860.1	20706207
AT4G11920.1	VIT_00s0181g00190.t01	AT4G21530.1	20706207
AT4G11920.1	VIT_00s0181g00210.t01	AT4G21530.1	20706207
AT4G11920.1	VIT_17s0000g10250.t01	AT4G24820.1	20706207
AT4G11920.1	VIT_06s0004g04340.t01	AT5G02530.1	20706207
AT4G11920.1	VIT_13s0019g00640.t01	AT5G02530.1	20706207
AT4G11920.1	VIT_17s0000g00200.t01	AT5G07310.1	20706207
AT4G11920.1	VIT_04s0008g05010.t01	AT5G25460.1	20706207
AT4G11920.1	VIT_07s0130g00410.t01	AT5G26360.1	20706207
AT4G11920.1	VIT_17s0000g08170.t01	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57275	Soybean	nucleus	83.19	81.92
PGSC0003DMT400058525	Potato	nucleus, plastid	82.74	78.24
Solyc08g080080.2.1	Tomato	nucleus, plastid	82.96	77.96
GSMUA_Achr11P...	Banana	plastid	79.42	73.87
KRH77460	Soybean	nucleus, plastid	75.0	73.86
Solyc12g056490.1.1	Tomato	nucleus, plastid	78.1	73.39
KRH04001	Soybean	mitochondrion	84.73	72.81
CDX94473	Canola	nucleus	75.66	72.46
PGSC0003DMT400027994	Potato	nucleus, plastid	77.65	72.22
AT4G11920.1	Thale cress	nucleus	75.89	72.21
Bra000756.1-P	Field mustard	nucleus	74.56	71.7
CDX86737	Canola	nucleus	74.78	71.16
Bra029426.1-P	Field mustard	nucleus	74.78	71.16
CDY51550	Canola	nucleus	71.02	70.7
CDX90811	Canola	nucleus	70.8	70.64
GSMUA_Achr11P...	Banana	plastid	73.45	67.62
Zm00001d027430_P001	Maize	plastid	74.78	65.76
Zm00001d048472_P001	Maize	nucleus, plastid	74.78	65.0
TraesCS4D01G341200.1	Wheat	nucleus, plastid	72.79	64.26
Os03t0123300-01	Rice	plastid	74.34	64.24
TraesCS4B01G346200.2	Wheat	nucleus, plastid	72.79	64.13
KRH27985	Soybean	nucleus, plastid	64.16	63.88
TraesCS1B01G166800.1	Wheat	cytosol	59.51	63.59
TraesCS7B01G353500.1	Wheat	plastid	56.86	63.46
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	72.79	58.44
VIT_13s0019g01840.t01	Wine grape	plastid	60.84	58.39
OQU93351	Sorghum	nucleus	75.22	48.85
VIT_05s0102g00680.t01	Wine grape	nucleus	37.39	40.72
VIT_05s0029g01120.t01	Wine grape	nucleus	37.17	40.68
VIT_05s0102g00550.t01	Wine grape	nucleus	37.17	40.68
VIT_05s0102g00640.t01	Wine grape	nucleus	37.17	40.68
VIT_15s0107g00320.t01	Wine grape	nucleus	39.16	39.33
VIT_16s0039g02510.t01	Wine grape	nucleus	38.5	38.58
VIT_16s0013g00280.t01	Wine grape	nucleus	34.29	34.07
VIT_16s0039g02620.t01	Wine grape	cytosol	13.05	25.43

Protein Annotations

EntrezGene:100256403	wikigene:100256403	MapMan:13.3.4.1.3	Gene3D:2.130.10.10	EMBL:AM452259	InterPro:Apc4_WD40_dom
ProteinID:CAN65426	ProteinID:CAN65426.1	ProteinID:CCB58416	ProteinID:CCB58416.1	InterPro:Cdc20/Fizzy	UniProt:F6HUJ3
EMBL:FN596251	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139	GO:GO:0006259	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0008361	GO:GO:0009058	GO:GO:0009987
GO:GO:0010492	GO:GO:0010997	GO:GO:0016043	GO:GO:0019538	GO:GO:0030234	GO:GO:0032877
GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100256403
wikigene:LOC100256403	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF31	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC53925	UniParc:UPI00021088BC
ArrayExpress:VIT_02s0025g04680	EnsemblPlantsGene:VIT_02s0025g04680	EnsemblPlants:VIT_02s0025g04680.t01	unigene:Vvi.3232	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002275649	RefSeq:XP_002275649.1	SEG:seg

Description

No Description!

Coordinates

chr2:-:4234851..4243987

Molecular Weight (calculated)

49577.6 Da

IEP (calculated)

9.201

GRAVY (calculated)

-0.318

Length

452 amino acids

Sequence
(BLAST)

001: MISVGYQPSP SRTIYSDRFI PSRTGSNFAL FDISPLANSP AEGREDGSGA YATLLRTALF GPDAGVCSPG TPDKLMRLDG KNSSVYPSSR NIFRYKTETR
101: QSMHSLSPFG FEDALPGVSH GPVKAARKVP RSPYKVLDAP ALQDDFYLNL VDWSAHNVLA VGLGNCVYLW NACSSKVTKL CDLGMDVSVC SVGWAQRGTH
201: LAVGTSNGKL QIWDASRCKR VRTMEGHRLR IGALAWSSSM LSSGSRDKTI LQRDIRAQDD FVNKLAGHKS EVCGLKWSYD NRELASGGND NRLFVWNQHS
301: TQPVLKYCEH TAAVKAIAWS PHLHGLLASG GGTADRCIRF WNTTTNSHLS CMDTGSQVCN LVWSKNVNEL VSTHGYSQNQ IIVWRYPTMS KLATLTGHTY
401: RVLYLAISPD GQTIVTGAGD ETLRFWNVFP SPKSQNTDSE IGASSLGRTQ IR

Best Arabidopsis Sequence Match ( AT4G22910.1 )
(BLAST)

001: MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA
101: AMFGPETPEK RDITGFSSSR NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSPYKVLDA PALQDDFYLN LVDWSAQNVL AVGLGNCVYL
201: WNACSSKVTK LCDLGAEDSV CSVGWALRGT HLAVGTSTGK VQIWDASRCK RTRTMEGHRL RVGALAWGSS VLSSGSRDKS ILQRDIRCQE DHVSKLAGHK
301: SEVCGLKWSY DNRELASGGN DNRLFVWNQH STQPVLKYSE HTAAVKAIAW SPHVHGLLAS GGGTADRCIR FWNTTTNTHL SSIDTCSQVC NLAWSKNVNE
401: LVSTHGYSQN QIIVWKYPTM SKIATLTGHT YRVLYLAVSP DGQTIVTGAG DETLRFWNVF PSPKSQNTDS EIGSSFFGRT TIR

Arabidopsis Description

FZR2FZR2 [Source:UniProtKB/TrEMBL;Acc:A0A178V5I2]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.