Factsheet for VIT_15s0107g00320.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096870.2.1	Tomato	nucleus	86.67	86.09
PGSC0003DMT400001467	Potato	nucleus	86.44	85.87
PGSC0003DMT400069533	Potato	nucleus, plastid	86.44	85.49
Solyc06g072830.2.1	Tomato	nucleus, plastid	85.56	84.62
VIT_05s0102g00640.t01	Wine grape	nucleus	74.89	81.6
VIT_05s0029g01120.t01	Wine grape	nucleus	74.44	81.11
KRH77717	Soybean	nucleus	82.0	81.1
VIT_05s0102g00680.t01	Wine grape	nucleus	74.67	80.96
VIT_05s0102g00550.t01	Wine grape	nucleus	74.22	80.87
KRH27762	Soybean	nucleus	80.89	80.0
VIT_16s0039g02510.t01	Wine grape	nucleus	79.78	79.6
OQU82251	Sorghum	cytosol	30.22	77.71
TraesCS5A01G272600.1	Wheat	plastid	75.78	73.02
TraesCS5D01G280600.1	Wheat	plastid	75.78	72.86
TraesCS6B01G296200.1	Wheat	plastid	76.44	72.57
TraesCS5B01G272800.1	Wheat	plastid	75.11	72.22
TraesCS6D01G246000.1	Wheat	plastid	76.0	72.0
KXG30937	Sorghum	nucleus	75.33	71.97
TraesCS6A01G268900.1	Wheat	plastid	75.78	71.94
Os02t0700100-01	Rice	extracellular	74.67	71.64
EES06634	Sorghum	nucleus	75.33	71.37
Zm00001d016034_P002	Maize	nucleus	74.22	70.91
Zm00001d000168_P001	Maize	plastid	74.44	70.23
TraesCS2D01G438800.1	Wheat	nucleus	71.78	66.32
TraesCS2B01G461400.1	Wheat	nucleus	72.0	66.26
Os04t0599800-01	Rice	nucleus	73.78	65.87
TraesCS2A01G440000.2	Wheat	nucleus	70.89	65.1
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	67.33	63.66
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	67.11	63.45
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	67.11	63.45
KXG27036	Sorghum	cytosol	25.33	62.98
VIT_16s0039g02620.t01	Wine grape	cytosol	32.44	62.93
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	65.11	61.68
TraesCS6A01G085400.1	Wheat	nucleus	51.78	60.99
Os09t0242300-00	Rice	plastid	63.11	59.41
HORVU5Hr1G041780.3	Barley	plastid	67.33	56.01
HORVU6Hr1G068080.3	Barley	plastid	66.0	55.72
Zm00001d017725_P001	Maize	mitochondrion	33.78	48.56
Zm00001d005562_P001	Maize	plastid	20.44	44.44
VIT_16s0013g00280.t01	Wine grape	nucleus	44.67	44.18
VIT_13s0019g01840.t01	Wine grape	plastid	42.89	40.98
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	39.33	39.16
TraesCS2D01G118700.1	Wheat	cytosol	16.22	34.76
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	9.56	29.45
Zm00001d006622_P001	Maize	golgi	16.44	21.89
TraesCS2D01G438900.1	Wheat	mitochondrion	1.11	1.23
TraesCS2B01G461500.1	Wheat	mitochondrion	1.11	1.22

Protein Annotations

EntrezGene:100250079	wikigene:100250079	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A5BP73	EMBL:AM466303
InterPro:Apc4_WD40_dom	ProteinID:CAN70390	ProteinID:CAN70390.1	ProteinID:CBI38209	ProteinID:CBI38209.3	InterPro:Cdc20/Fizzy
EMBL:FN596514	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027
GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100250079	wikigene:LOC100250079
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015216A6	ArrayExpress:VIT_15s0107g00320	EnsemblPlantsGene:VIT_15s0107g00320
EnsemblPlants:VIT_15s0107g00320.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002264396	RefSeq:XP_002264396.1	RefSeq:XP_019081252.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:-:8525398..8528643

Molecular Weight (calculated)

49673.3 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.520

Length

450 amino acids

Sequence
(BLAST)

001: MDAGSLTSSN KYQSKCPDQR RTVRENLDRF IPNRSAMDFD YAHYMLTEGR KGKENPAASS PSKEAYRKQM AETLNINRTR ILAFKNKPPT PVELIPQEFY
101: SASIPQQSKA SKPRRHIPQT SERTLDAPDL VDDYYLNLLD WGSSNVLAIA LGGTVYLWDA SDGSTSELVT LEDETGPVTS VSWAPDGRHI AIGLNNSDVQ
201: LWDSTANRLL RTLKGGHASR VGSLAWNNHV LTTGGMDGKI INNDVRVRSH IVETYRGHRQ EVCGLKWSAS GQQLASGGND NLLHIWDRSS ASSNSPTQWL
301: HRMEDHTAAV KALAWCPFQG NLLASGGGGG DRCIKFWNTH TGACLNSVDT GSQVCALLWN KNERELLSSH GFTQNQLTLW KYPSMVKMAE LTGHTSRVLF
401: MAQSPDGCTV ASAAGDETLR FWNVFGTPEV AAKPAPKAHP EPFAHLNRIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.