CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92655
EER95202
EES02737
EES04545
EES05908
EES05938
EES07517
KXG20781
KXG21309
KXG33895

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	EES02737	AT1G06590.1	20706207
AT4G33270.1	EER95202	AT1G78770.1	20706207
AT4G33270.1	KXG20781	AT2G04660.1	20706207
AT4G33270.1	KXG33895	AT2G20000.1	17944809
AT4G33270.1	KXG33895	AT2G20000.1	20706207
AT4G33270.1	KXG21309	AT2G39090.1	20706207
AT4G33270.1	EES04545	AT3G11830.1	20706207
AT4G33270.1	EES07517	AT3G48150.1	20706207
AT4G33270.1	EES05908	AT4G21530.1	20706207
AT4G33270.1	EER92655	AT5G26360.1	20706207
AT5G26900.1	KXG33895	AT2G20000.1	17944809
AT5G27080.1	EES04545	AT3G11830.1	20706207
AT5G27080.1	EES05938	AT3G20050.1	20706207
AT5G27080.1	EER92655	AT5G26360.1	20706207
AT5G27570.1	KXG33895	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30937	Sorghum	nucleus	83.43	31.0
EES06634	Sorghum	nucleus	84.0	30.95
Bra034555.1-P	Field mustard	nucleus	66.29	30.61
PGSC0003DMT400001467	Potato	nucleus	78.86	30.46
Solyc03g096870.2.1	Tomato	nucleus	78.86	30.46
VIT_05s0102g00550.t01	Wine grape	nucleus	71.43	30.27
VIT_05s0029g01120.t01	Wine grape	nucleus	71.43	30.27
VIT_15s0107g00320.t01	Wine grape	nucleus	77.71	30.22
AT4G33260.1	Thale cress	nucleus	77.14	30.2
VIT_05s0102g00680.t01	Wine grape	nucleus	71.43	30.12
VIT_05s0102g00640.t01	Wine grape	nucleus	70.86	30.02
AT4G33270.1	Thale cress	nucleus	77.14	29.54
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	72.0	29.44
Solyc06g072830.2.1	Tomato	nucleus, plastid	76.0	29.23
PGSC0003DMT400069533	Potato	nucleus, plastid	76.0	29.23
AT5G27570.1	Thale cress	nucleus	73.71	28.67
VIT_16s0039g02510.t01	Wine grape	nucleus	72.0	27.94
AT5G27080.1	Thale cress	nucleus	69.71	27.6
AT5G26900.1	Thale cress	nucleus	69.71	27.48
Bra008327.1-P	Field mustard	cytosol, mitochondrion	66.86	27.34
Bra005544.1-P	Field mustard	nucleus	68.0	27.11
Bra037011.1-P	Field mustard	nucleus	62.29	26.01
Solyc08g005420.2.1	Tomato	nucleus	66.29	25.89
PGSC0003DMT400047585	Potato	nucleus	65.14	25.45
Bra011430.1-P	Field mustard	cytosol	76.0	18.6
EES02145	Sorghum	plastid	48.0	17.43
GSMUA_Achr2P19120_001	Banana	cytosol	22.29	14.61
OQU93351	Sorghum	nucleus	47.43	11.93
CDX98239	Canola	nucleus	5.71	7.46
KRH08491	Soybean	cytosol	1.71	2.14
VIT_16s0039g02620.t01	Wine grape	cytosol	2.29	1.72
KXG27036	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1Z5RFG6	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:OQU82251	ProteinID:OQU82251	ProteinID:OQU82251.1	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	EnsemblPlantsGene:SORBI_3006G202150
SUPFAM:SSF50978	UniParc:UPI0001A86E93	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002447043.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:55338996..55339766

Molecular Weight (calculated)

19411.8 Da

IEP (calculated)

8.029

GRAVY (calculated)

-0.456

Length

175 amino acids

Sequence
(BLAST)

001: MDGKIMNNDV RIRNNAVQTY HGHEQETAGH TQWLHRLQGH LSAVKALAWC SFQSNLLASG GGGDDRCIKF WNTHTGACLN SVDTGSQNKN ERELLSSHGF
101: TQNQLILWKY PSMVKLAELN GHTSRVLFMA QSPDGCNVAS GAADETLRIW NVFGTPETVP KAPYTGIFNS FNHIR

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.