Factsheet for VIT_05s0029g01120.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0102g00640.t01	Wine grape	nucleus	96.85	96.85
VIT_05s0102g00550.t01	Wine grape	nucleus	96.61	96.61
VIT_05s0102g00680.t01	Wine grape	nucleus	95.88	95.42
VIT_16s0039g02510.t01	Wine grape	nucleus	81.6	74.72
VIT_15s0107g00320.t01	Wine grape	nucleus	81.11	74.44
OQU82251	Sorghum	cytosol	30.27	71.43
TraesCS5A01G272600.1	Wheat	plastid	72.4	64.03
TraesCS5D01G280600.1	Wheat	plastid	72.4	63.89
TraesCS5B01G272800.1	Wheat	plastid	72.16	63.68
Os02t0700100-01	Rice	extracellular	71.91	63.33
TraesCS6B01G296200.1	Wheat	plastid	72.64	63.29
KXG30937	Sorghum	nucleus	72.16	63.27
TraesCS6A01G268900.1	Wheat	plastid	72.4	63.08
TraesCS6D01G246000.1	Wheat	plastid	72.4	62.95
EES06634	Sorghum	nucleus	71.43	62.11
Zm00001d016034_P002	Maize	nucleus	70.7	62.0
Zm00001d000168_P001	Maize	plastid	70.94	61.43
Os04t0599800-01	Rice	nucleus	71.43	58.53
TraesCS2D01G438800.1	Wheat	nucleus	68.52	58.11
TraesCS2B01G461400.1	Wheat	nucleus	68.52	57.87
TraesCS2A01G440000.2	Wheat	nucleus	68.28	57.55
VIT_16s0039g02620.t01	Wine grape	cytosol	31.96	56.9
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	64.89	56.3
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	64.89	56.3
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	64.65	56.09
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	62.95	54.74
TraesCS6A01G085400.1	Wheat	nucleus	50.12	54.19
Os09t0242300-00	Rice	plastid	62.47	53.97
HORVU5Hr1G041780.3	Barley	plastid	65.86	50.28
HORVU6Hr1G068080.3	Barley	plastid	64.41	49.91
KXG27036	Sorghum	cytosol	21.79	49.72
Zm00001d017725_P001	Maize	mitochondrion	31.96	42.17
VIT_16s0013g00280.t01	Wine grape	nucleus	44.31	40.22
VIT_13s0019g01840.t01	Wine grape	plastid	43.34	38.0
VIT_02s0025g04680.t01	Wine grape	cytosol, nucleus, plastid	40.68	37.17
Zm00001d005562_P001	Maize	plastid	17.19	34.3
TraesCS2D01G118700.1	Wheat	cytosol	13.08	25.71
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	7.75	21.92
Zm00001d006622_P001	Maize	golgi	13.56	16.57
TraesCS2D01G438900.1	Wheat	mitochondrion	0.48	0.49
TraesCS2B01G461500.1	Wheat	mitochondrion	0.48	0.49

Protein Annotations

EntrezGene:100247018	wikigene:100247018	EntrezGene:100247752	wikigene:100247752	MapMan:13.3.4.1.4	Gene3D:2.130.10.10
InterPro:Apc4_WD40_dom	ProteinID:CBI17229	ProteinID:CBI17229.3	InterPro:Cdc20/Fizzy	UniProt:D7SNK0	EMBL:FN594958
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100247018	wikigene:LOC100247018	EntrezGene:LOC100247752
wikigene:LOC100247752	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00015CB9EF	ArrayExpress:VIT_05s0029g01120
EnsemblPlantsGene:VIT_05s0029g01120	EnsemblPlants:VIT_05s0029g01120.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	RefSeq:XP_002271532	RefSeq:XP_002271532.2	RefSeq:XP_003634000	RefSeq:XP_003634000.1	:

Description

No Description!

Coordinates

chr5:-:16965275..16966870

Molecular Weight (calculated)

46207.8 Da

IEP (calculated)

8.492

GRAVY (calculated)

-0.417

Length

413 amino acids

Sequence
(BLAST)

001: MDFDFAHYML TKRGKDKENQ SVVRSQSKEA YLKLLAETFN MNRSRILAFK NKPHTPVKLI PDEFYSSVHQ SKRSKPLRHI PQTPERTLDA PDIIDDFCLN
101: LMDWSSSNVL ALALQNTVYL WDASNGSASE LVTVDDENGP VTSVSWAADG QYIAIGLNSS DVQLWDSTAN RLLRTLRGGH QSRVGSLDWK NHILTTGGMD
201: GQIINNDVRV HSHIVATFRG HRQEVCGLKW STSGQQLASG GNDNLLYIWD RSMASMHSRS QWLHRLEDHT AAVKALAWCP FQRNLLASGG GGSDCCIKFW
301: NTHTGACLNS VDTGSQVCAL LWNKNERELL SSHGFMQNQL TLWMYPSMVK TAELTGHTSR VLFMAQSPDG RTVATAAGDE TLKFWNAFGM PEVKKAAPKA
401: EHPGPFPHIR RIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.