Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G280600.1 | Wheat | plastid | 98.5 | 98.5 |
| TraesCS5A01G272600.1 | Wheat | plastid | 97.86 | 98.07 |
| TraesCS6B01G296200.1 | Wheat | plastid | 97.01 | 95.78 |
| Os02t0700100-01 | Rice | extracellular | 91.03 | 90.83 |
| KXG30937 | Sorghum | nucleus | 89.96 | 89.38 |
| Zm00001d016034_P002 | Maize | nucleus | 88.46 | 87.9 |
| Zm00001d000168_P001 | Maize | plastid | 89.53 | 87.84 |
| EES06634 | Sorghum | nucleus | 88.68 | 87.37 |
| HORVU5Hr1G074370.15 | Barley | endoplasmic reticulum, vacuole | 84.62 | 83.37 |
| TraesCS2B01G461400.1 | Wheat | nucleus | 80.77 | 77.3 |
| PGSC0003DMT400069533 | Potato | nucleus, plastid | 73.08 | 75.16 |
| VIT_15s0107g00320.t01 | Wine grape | nucleus | 72.22 | 75.11 |
| PGSC0003DMT400001467 | Potato | nucleus | 72.65 | 75.06 |
| Solyc06g072830.2.1 | Tomato | nucleus, plastid | 72.86 | 74.95 |
| Solyc03g096870.2.1 | Tomato | nucleus | 72.44 | 74.83 |
| AT4G33260.1 | Thale cress | nucleus | 69.23 | 72.48 |
| VIT_05s0102g00640.t01 | Wine grape | nucleus | 63.89 | 72.4 |
| TraesCS5B01G185900.1 | Wheat | mitochondrion, nucleus | 73.5 | 72.27 |
| VIT_05s0029g01120.t01 | Wine grape | nucleus | 63.68 | 72.16 |
| VIT_05s0102g00550.t01 | Wine grape | nucleus | 63.68 | 72.16 |
| VIT_05s0102g00680.t01 | Wine grape | nucleus | 63.89 | 72.05 |
| AT4G33270.1 | Thale cress | nucleus | 69.44 | 71.12 |
| Bra037011.1-P | Field mustard | nucleus | 63.46 | 70.88 |
| VIT_16s0039g02510.t01 | Wine grape | nucleus | 66.45 | 68.96 |
| Bra034555.1-P | Field mustard | nucleus | 55.13 | 68.07 |
| Bra005544.1-P | Field mustard | nucleus | 63.25 | 67.43 |
| PGSC0003DMT400047585 | Potato | nucleus | 63.46 | 66.29 |
| Solyc08g005420.2.1 | Tomato | nucleus | 63.25 | 66.07 |
| AT5G27570.1 | Thale cress | nucleus | 63.25 | 65.78 |
| AT5G27080.1 | Thale cress | nucleus | 61.75 | 65.38 |
| AT5G26900.1 | Thale cress | nucleus | 61.75 | 65.09 |
| Bra008327.1-P | Field mustard | cytosol, mitochondrion | 55.77 | 60.98 |
| Zm00001d017725_P001 | Maize | mitochondrion | 36.97 | 55.27 |
| AT5G27945.1 | Thale cress | cytosol, plastid, vacuole | 50.21 | 54.91 |
| VIT_16s0039g02620.t01 | Wine grape | cytosol | 25.64 | 51.72 |
| KRH08491 | Soybean | cytosol | 15.38 | 51.43 |
| Bra011430.1-P | Field mustard | cytosol | 70.09 | 45.87 |
| CDX98239 | Canola | nucleus | 12.82 | 44.78 |
| TraesCS3B01G595600.1 | Wheat | plastid | 40.38 | 38.97 |
| TraesCS4B01G346200.2 | Wheat | nucleus, plastid | 38.89 | 35.48 |
| TraesCS7B01G353500.1 | Wheat | plastid | 30.34 | 35.06 |
| TraesCS1B01G166800.1 | Wheat | cytosol | 31.41 | 34.75 |
| GSMUA_Achr2P19120_001 | Banana | cytosol | 17.09 | 29.96 |
| TraesCS2B01G461500.1 | Wheat | mitochondrion | 1.07 | 1.22 |
Protein Annotations
| MapMan:13.3.4.1.4 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12894 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19918 | PANTHER:PTHR19918:SF30 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS5B01G272800 | EnsemblPlants:TraesCS5B01G272800.1 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 |
Description
No Description!
Coordinates
chr5B:+:458386082..458387867
Molecular Weight (calculated)
51341.3 Da
IEP (calculated)
7.630
GRAVY (calculated)
-0.461
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGSRSISS GKSRAAVQRP PLQEAGSRPY MPPLSTRNPS AKCYGDRFIP DRSAMDMDVA HYLLTEGKKD KENAVASPSK EAYRRLLAEK LLNNRTRILA
101: FRNKPPEPEN VFAADTVSSH QAKPAKQRRY IPQSAERTLD APDLVDDYYL NLMDWGSNNV LSIALGDTMY LWDASSGSTS ELVTVEEDNG PITSVSWAPD
201: GRHLAIGLNS SDIQLWDTSS SRLLRTLKGV HESRVGSLAW NNNILTTGGM DGGIVNNDVR IRDHAVQTYQ GHNQEVCGLK WSGSGQQLAS GGNDNLLHIW
301: DVSMASSMPS AGRNQWLHRL EDHMAAVKAL AWCPFQSNLL ATGGGGSDRC IKFWNTHTGA CLNSVDTGSQ VCSLLWNKNE RELLSSHGFT QNQLTLWKYP
401: SMVKMAELTG HTSRVLFMAQ SPDGCTVASA SADETLRFWN VFGTPEVAKP APKASHSGMF NSSFAHIR
101: FRNKPPEPEN VFAADTVSSH QAKPAKQRRY IPQSAERTLD APDLVDDYYL NLMDWGSNNV LSIALGDTMY LWDASSGSTS ELVTVEEDNG PITSVSWAPD
201: GRHLAIGLNS SDIQLWDTSS SRLLRTLKGV HESRVGSLAW NNNILTTGGM DGGIVNNDVR IRDHAVQTYQ GHNQEVCGLK WSGSGQQLAS GGNDNLLHIW
301: DVSMASSMPS AGRNQWLHRL EDHMAAVKAL AWCPFQSNLL ATGGGGSDRC IKFWNTHTGA CLNSVDTGSQ VCSLLWNKNE RELLSSHGFT QNQLTLWKYP
401: SMVKMAELTG HTSRVLFMAQ SPDGCTVASA SADETLRFWN VFGTPEVAKP APKASHSGMF NSSFAHIR
001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
Arabidopsis Description
CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.