Factsheet for Os02t0700100-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0247200-01
Os02t0656300-01
Os02t0785900-00
Os03t0236966-00
Os04t0484800-01
Os04t0551800-01
Os05t0149900-01
Os06t0538000-01
Os06t0622500-00
Os06t0679100-00
Os06t0687700-01
Os12t0626300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	Os12t0626300-01	AT1G06590.1	20706207
AT4G33270.1	Os03t0236966-00	AT1G78770.1	20706207
AT4G33270.1	Os04t0484800-01	AT2G04660.1	20706207
AT4G33270.1	Os06t0622500-00	AT2G20000.1	17944809
AT4G33270.1	Os06t0622500-00	AT2G20000.1	20706207
AT4G33270.1	Os05t0149900-01	AT2G39090.1	20706207
AT4G33270.1	Os06t0687700-01	AT3G11830.1	20706207
AT4G33270.1	Os02t0656300-01	AT3G48150.1	20706207
AT4G33270.1	Os06t0679100-00	AT3G48150.1	20706207
AT4G33270.1	Os02t0785900-00	AT4G21530.1	20706207
AT4G33270.1	Os02t0247200-01	AT5G26360.1	20706207
AT4G33270.1	Os06t0538000-01	AT5G26360.1	20706207
AT5G26900.1	Os06t0622500-00	AT2G20000.1	17944809
AT5G27080.1	Os06t0687700-01	AT3G11830.1	20706207
AT5G27080.1	Os04t0551800-01	AT3G20050.1	20706207
AT5G27080.1	Os02t0247200-01	AT5G26360.1	20706207
AT5G27080.1	Os06t0538000-01	AT5G26360.1	20706207
AT5G27570.1	Os06t0622500-00	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG30937	Sorghum	nucleus	93.39	92.99
TraesCS5A01G272600.1	Wheat	plastid	91.9	92.29
EES06634	Sorghum	nucleus	93.18	92.0
TraesCS5D01G280600.1	Wheat	plastid	91.47	91.67
TraesCS5B01G272800.1	Wheat	plastid	90.83	91.03
TraesCS6B01G296200.1	Wheat	plastid	91.9	90.93
TraesCS6D01G246000.1	Wheat	plastid	91.9	90.74
TraesCS6A01G268900.1	Wheat	plastid	91.68	90.72
Zm00001d016034_P002	Maize	nucleus	91.04	90.66
Zm00001d000168_P001	Maize	plastid	90.83	89.31
Os04t0599800-01	Rice	nucleus	89.34	83.13
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	80.6	79.58
PGSC0003DMT400001467	Potato	nucleus	72.71	75.28
PGSC0003DMT400069533	Potato	nucleus, plastid	72.92	75.16
Solyc03g096870.2.1	Tomato	nucleus	72.49	75.06
Solyc06g072830.2.1	Tomato	nucleus, plastid	72.71	74.95
VIT_15s0107g00320.t01	Wine grape	nucleus	71.64	74.67
AT4G33260.1	Thale cress	nucleus	69.08	72.48
VIT_05s0029g01120.t01	Wine grape	nucleus	63.33	71.91
VIT_05s0102g00640.t01	Wine grape	nucleus	63.33	71.91
VIT_05s0102g00550.t01	Wine grape	nucleus	63.11	71.67
VIT_05s0102g00680.t01	Wine grape	nucleus	63.33	71.57
Bra037011.1-P	Field mustard	nucleus	63.54	71.12
AT4G33270.1	Thale cress	nucleus	69.3	71.12
Os09t0242300-00	Rice	plastid	71.43	70.08
VIT_16s0039g02510.t01	Wine grape	nucleus	66.52	69.18
Bra005544.1-P	Field mustard	nucleus	63.54	67.88
Bra034555.1-P	Field mustard	nucleus	54.8	67.81
AT5G27570.1	Thale cress	nucleus	63.75	66.44
AT5G27080.1	Thale cress	nucleus	62.47	66.29
AT5G26900.1	Thale cress	nucleus	62.69	66.22
PGSC0003DMT400047585	Potato	nucleus	62.9	65.85
Solyc08g005420.2.1	Tomato	nucleus	62.05	64.96
HORVU6Hr1G068080.3	Barley	plastid	72.49	63.79
Bra008327.1-P	Field mustard	cytosol, mitochondrion	55.44	60.75
Zm00001d017725_P001	Maize	mitochondrion	38.59	57.83
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	50.96	55.84
VIT_16s0039g02620.t01	Wine grape	cytosol	25.59	51.72
KRH08491	Soybean	cytosol	15.35	51.43
Bra011430.1-P	Field mustard	cytosol	69.94	45.87
CDX98239	Canola	nucleus	12.37	43.28
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	40.09	39.33
Os03t0123300-01	Rice	plastid	39.66	35.56
GSMUA_Achr2P19120_001	Banana	cytosol	17.06	29.96
Os01t0973000-01	Rice	cytosol	0.64	1.07

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EntrezGene:4330430	EMBL:AK102954	InterPro:Apc4_WD40_dom	ProteinID:BAD07515.1
ProteinID:BAD07886.1	ProteinID:BAF09751.1	ProteinID:BAS80459.1	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlantsGene:Os02g0700100	EnsemblPlants:Os02t0700100-01	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	UniProt:Q6Z8D3	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI0000236702	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	RefSeq:XP_015622694.1	RefSeq:XP_015622695.1	SEG:seg	:	:

Description

cell division cycle protein 20.1Similar to WD-repeat protein. (Os02t0700100-01)

Coordinates

chr2:+:28802911..28805716

Molecular Weight (calculated)

51303.0 Da

IEP (calculated)

7.251

GRAVY (calculated)

-0.471

Length

469 amino acids

Sequence
(BLAST)

001: MDAGSHSISS EKSHGLAPRP PLQEAGSRPY MPSLSTASRN PSAKCYGDRF IPDRSAMDMD MAHYLLTEPK KDKENAAASP SKEVYRRLLA EKLLNNRTRI
101: LAFRNKPPEP ENVSAADTAS THQAKPAKQR RYIPQSAERT LDAPDLVDDY YLNLLDWGSK NVLSIALGDT VYLWDASSGS TSELVTVDED SGPITSVSWA
201: PDGQHVAVGL NSSDIQLWDT SSNRLLRTLR GVHESRVGSL AWNNNILTTG GMDGNIVNND VRIRNHVVQT YQGHSQEVCG LKWSGSGQQL ASGGNDNLLH
301: IWDVSMASSV PSAGRNQWLH RLEDHTAAVK ALAWCPFQSN LLATGGGGSD RCIKFWNTHT GACLNSVDTG SQVCALLWNK NERELLSSHG FTQNQLTLWK
401: YPSMVKMAEL TGHTSRVLFM AQSPDGCTVA SAAADETLRF WNVFGSPEAP KPAAKASHTG MFNSFNHLR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.