Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G246000.1 | Wheat | plastid | 99.16 | 98.95 |
| TraesCS6B01G296200.1 | Wheat | plastid | 98.95 | 98.95 |
| TraesCS5A01G272600.1 | Wheat | plastid | 95.36 | 96.79 |
| Os02t0700100-01 | Rice | extracellular | 90.72 | 91.68 |
| KXG30937 | Sorghum | nucleus | 89.24 | 89.81 |
| Zm00001d016034_P002 | Maize | nucleus | 87.55 | 88.11 |
| Zm00001d000168_P001 | Maize | plastid | 88.4 | 87.84 |
| EES06634 | Sorghum | nucleus | 87.97 | 87.79 |
| TraesCS2A01G440000.2 | Wheat | nucleus | 79.32 | 76.73 |
| PGSC0003DMT400069533 | Potato | nucleus, plastid | 72.78 | 75.82 |
| VIT_15s0107g00320.t01 | Wine grape | nucleus | 71.94 | 75.78 |
| Solyc06g072830.2.1 | Tomato | nucleus, plastid | 72.36 | 75.38 |
| PGSC0003DMT400001467 | Potato | nucleus | 71.94 | 75.28 |
| Solyc03g096870.2.1 | Tomato | nucleus | 71.73 | 75.06 |
| TraesCS5A01G197800.2 | Wheat | mitochondrion, plastid | 73.63 | 73.32 |
| AT4G33260.1 | Thale cress | nucleus | 68.78 | 72.93 |
| VIT_05s0102g00640.t01 | Wine grape | nucleus | 63.29 | 72.64 |
| VIT_05s0029g01120.t01 | Wine grape | nucleus | 63.08 | 72.4 |
| VIT_05s0102g00550.t01 | Wine grape | nucleus | 63.08 | 72.4 |
| VIT_05s0102g00680.t01 | Wine grape | nucleus | 63.29 | 72.29 |
| AT4G33270.1 | Thale cress | nucleus | 68.99 | 71.55 |
| Bra037011.1-P | Field mustard | nucleus | 62.87 | 71.12 |
| TraesCS6A01G085400.1 | Wheat | nucleus | 56.96 | 70.68 |
| VIT_16s0039g02510.t01 | Wine grape | nucleus | 66.24 | 69.62 |
| Bra034555.1-P | Field mustard | nucleus | 54.64 | 68.34 |
| Bra005544.1-P | Field mustard | nucleus | 63.08 | 68.11 |
| HORVU6Hr1G068080.3 | Barley | plastid | 75.53 | 67.17 |
| PGSC0003DMT400047585 | Potato | nucleus | 62.87 | 66.52 |
| AT5G27570.1 | Thale cress | nucleus | 62.87 | 66.22 |
| Solyc08g005420.2.1 | Tomato | nucleus | 62.45 | 66.07 |
| AT5G27080.1 | Thale cress | nucleus | 61.39 | 65.84 |
| AT5G26900.1 | Thale cress | nucleus | 61.18 | 65.32 |
| Bra008327.1-P | Field mustard | cytosol, mitochondrion | 55.49 | 61.45 |
| Zm00001d017725_P001 | Maize | mitochondrion | 36.71 | 55.59 |
| AT5G27945.1 | Thale cress | cytosol, plastid, vacuole | 50.0 | 55.37 |
| VIT_16s0039g02620.t01 | Wine grape | cytosol | 25.32 | 51.72 |
| KRH08491 | Soybean | cytosol | 15.19 | 51.43 |
| Bra011430.1-P | Field mustard | cytosol | 69.62 | 46.15 |
| CDX98239 | Canola | nucleus | 12.87 | 45.52 |
| TraesCS3A01G527600.1 | Wheat | plastid | 39.45 | 38.4 |
| GSMUA_Achr2P19120_001 | Banana | cytosol | 17.09 | 30.34 |
Protein Annotations
| MapMan:13.3.4.1.4 | Gene3D:2.130.10.10 | InterPro:Apc4_WD40_dom | InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 |
| GO:GO:0019538 | GO:GO:0030234 | GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12894 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 |
| PANTHER:PTHR19918 | PANTHER:PTHR19918:SF30 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS6A01G268900 | EnsemblPlants:TraesCS6A01G268900.1 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | TIGR:cd00200 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:495450749..495453005
Molecular Weight (calculated)
51876.9 Da
IEP (calculated)
7.396
GRAVY (calculated)
-0.435
Length
474 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAGSHSISS GKNSAAAVQR PPLQEAGSRP YMPPLSTTSR NPAAKCYGDR FIPDRSAMDM DMAHYLLTET KKDKENAAAI AASPSKEAYR RLLAEKLLNN
101: RTRILAFRNK PPEPENVFAA DTVSSHQAKP AKQRRYIPQS AERTLDAPDL VDDYYLNLMD WGSSNVLSIA LGDTMYLWDA SSGSTSELVT VEEDNGPITS
201: VSWAPDGRHL AIGLNSSDIQ LWDTSSNRLL RTLKGVHESR VGSLAWNNNI LTTGGMDGRI VNNDVRIRDH AVQTYQGHSQ EVCGLKWSGS GQQLASGGND
301: NLLHIWDVSM ASSMPSAGRN QWLHRLEDHM AAVKALAWCP FQSNLLATGG GGSDRCIKFW NTHTGACLNS VDTGSQVCSL LWNKNERELL SSHGFTQNQL
401: TLWKYPSMVK MAELTGHTSR VLFMAQSPDG CTVASAAADE TLRFWNVFGT PEVTKPAPKA SQSGMFSSSF AHIR
101: RTRILAFRNK PPEPENVFAA DTVSSHQAKP AKQRRYIPQS AERTLDAPDL VDDYYLNLMD WGSSNVLSIA LGDTMYLWDA SSGSTSELVT VEEDNGPITS
201: VSWAPDGRHL AIGLNSSDIQ LWDTSSNRLL RTLKGVHESR VGSLAWNNNI LTTGGMDGRI VNNDVRIRDH AVQTYQGHSQ EVCGLKWSGS GQQLASGGND
301: NLLHIWDVSM ASSMPSAGRN QWLHRLEDHM AAVKALAWCP FQSNLLATGG GGSDRCIKFW NTHTGACLNS VDTGSQVCSL LWNKNERELL SSHGFTQNQL
401: TLWKYPSMVK MAELTGHTSR VLFMAQSPDG CTVASAAADE TLRFWNVFGT PEVTKPAPKA SQSGMFSSSF AHIR
001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
Arabidopsis Description
CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.