Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG27036 | Sorghum | cytosol | 43.97 | 56.35 |
| Zm00001d005562_P001 | Maize | plastid | 33.19 | 37.2 |
| VIT_16s0039g02510.t01 | Wine grape | nucleus | 65.52 | 33.7 |
| VIT_15s0107g00320.t01 | Wine grape | nucleus | 62.93 | 32.44 |
| VIT_05s0102g00640.t01 | Wine grape | nucleus | 57.33 | 32.2 |
| VIT_05s0029g01120.t01 | Wine grape | nucleus | 56.9 | 31.96 |
| VIT_05s0102g00680.t01 | Wine grape | nucleus | 56.47 | 31.57 |
| VIT_05s0102g00550.t01 | Wine grape | nucleus | 56.03 | 31.48 |
| TraesCS6A01G085400.1 | Wheat | nucleus | 46.55 | 28.27 |
| Zm00001d009154_P001 | Maize | extracellular, plasma membrane, plastid | 17.67 | 28.08 |
| TraesCS2D01G118700.1 | Wheat | cytosol | 24.14 | 26.67 |
| TraesCS5A01G272600.1 | Wheat | plastid | 51.72 | 25.7 |
| TraesCS5B01G272800.1 | Wheat | plastid | 51.72 | 25.64 |
| TraesCS5D01G280600.1 | Wheat | plastid | 51.72 | 25.64 |
| Os02t0700100-01 | Rice | extracellular | 51.72 | 25.59 |
| KXG30937 | Sorghum | nucleus | 51.72 | 25.48 |
| TraesCS6B01G296200.1 | Wheat | plastid | 51.72 | 25.32 |
| TraesCS6A01G268900.1 | Wheat | plastid | 51.72 | 25.32 |
| Zm00001d016034_P002 | Maize | nucleus | 51.29 | 25.27 |
| EES06634 | Sorghum | nucleus | 51.72 | 25.26 |
| TraesCS6D01G246000.1 | Wheat | plastid | 51.72 | 25.26 |
| Zm00001d000168_P001 | Maize | plastid | 51.29 | 24.95 |
| HORVU5Hr1G074370.15 | Barley | endoplasmic reticulum, vacuole | 50.86 | 24.84 |
| TraesCS2B01G461400.1 | Wheat | nucleus | 52.16 | 24.74 |
| TraesCS2D01G438800.1 | Wheat | nucleus | 50.86 | 24.23 |
| TraesCS2A01G440000.2 | Wheat | nucleus | 50.43 | 23.88 |
| Os04t0599800-01 | Rice | nucleus | 51.29 | 23.61 |
| TraesCS5A01G197800.2 | Wheat | mitochondrion, plastid | 48.28 | 23.53 |
| TraesCS5B01G185900.1 | Wheat | mitochondrion, nucleus | 47.84 | 23.32 |
| TraesCS5D01G193100.1 | Wheat | mitochondrion, nucleus | 47.41 | 23.11 |
| Os09t0242300-00 | Rice | plastid | 44.83 | 21.76 |
| HORVU5Hr1G041780.3 | Barley | plastid | 48.28 | 20.7 |
| VIT_16s0013g00280.t01 | Wine grape | nucleus | 31.9 | 16.26 |
| HORVU6Hr1G068080.3 | Barley | plastid | 34.91 | 15.2 |
| VIT_13s0019g01840.t01 | Wine grape | plastid | 30.6 | 15.07 |
| Zm00001d017725_P001 | Maize | mitochondrion | 18.1 | 13.42 |
| VIT_02s0025g04680.t01 | Wine grape | cytosol, nucleus, plastid | 25.43 | 13.05 |
| Zm00001d006622_P001 | Maize | golgi | 18.1 | 12.43 |
| OQU82251 | Sorghum | cytosol | 1.72 | 2.29 |
| TraesCS2D01G438900.1 | Wheat | mitochondrion | 0.43 | 0.25 |
| TraesCS2B01G461500.1 | Wheat | mitochondrion | 0.43 | 0.24 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:Apc4_WD40_dom | ProteinID:CBI26574 | ProteinID:CBI26574.3 | InterPro:Cdc20/Fizzy |
| UniProt:D7T7V3 | EMBL:FN595750 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 | GO:GO:0030234 |
| GO:GO:0097027 | GO:GO:1904668 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF12894 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF30 | SUPFAM:SSF50978 |
| UniParc:UPI0001BE2B23 | ArrayExpress:VIT_16s0039g02620 | EnsemblPlantsGene:VIT_16s0039g02620 | EnsemblPlants:VIT_16s0039g02620.t01 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_003634015 | RefSeq:XP_003634015.1 | SEG:seg |
Description
No Description!
Coordinates
chr16:-:2941212..2943159
Molecular Weight (calculated)
26038.8 Da
IEP (calculated)
6.881
GRAVY (calculated)
-0.473
Length
232 amino acids
Sequence
(BLAST)
(BLAST)
001: MELIIVLYVS DTLRRFTSGP FESKCPLLEQ FHRRRKTREN LDRFIPNRSA LDFDNAHYML TEGRKGKENP SVVSSPSKEA YLKLMAETFN MNRTRILACK
101: NKPPTAVKLI PHEFSSPVHQ SKPSKSKRHI PQTSEKTLDA SDLIDDYYLN LLDCGSSNIL AIALGSTVYL WDGSNGFASE LVTIDDENGP VTSVSWAADG
201: QHIAIGLNNS DVQLWDSTAN ELLRTLRDGH QS
101: NKPPTAVKLI PHEFSSPVHQ SKPSKSKRHI PQTSEKTLDA SDLIDDYYLN LLDCGSSNIL AIALGSTVYL WDGSNGFASE LVTIDDENGP VTSVSWAADG
201: QHIAIGLNNS DVQLWDSTAN ELLRTLRDGH QS
001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR
Arabidopsis Description
CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.