CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92655
EER95202
EES02737
EES04545
EES05908
EES05938
EES07517
KXG20781
KXG21309
KXG33895

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	EES02737	AT1G06590.1	20706207
AT4G33270.1	EER95202	AT1G78770.1	20706207
AT4G33270.1	KXG20781	AT2G04660.1	20706207
AT4G33270.1	KXG33895	AT2G20000.1	17944809
AT4G33270.1	KXG33895	AT2G20000.1	20706207
AT4G33270.1	KXG21309	AT2G39090.1	20706207
AT4G33270.1	EES04545	AT3G11830.1	20706207
AT4G33270.1	EES07517	AT3G48150.1	20706207
AT4G33270.1	EES05908	AT4G21530.1	20706207
AT4G33270.1	EER92655	AT5G26360.1	20706207
AT5G26900.1	KXG33895	AT2G20000.1	17944809
AT5G27080.1	EES04545	AT3G11830.1	20706207
AT5G27080.1	EES05938	AT3G20050.1	20706207
AT5G27080.1	EER92655	AT5G26360.1	20706207
AT5G27570.1	KXG33895	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_16s0039g02620.t01	Wine grape	cytosol	56.35	43.97
KRH08491	Soybean	cytosol	32.6	42.14
KXG30937	Sorghum	nucleus	70.72	27.18
EES06634	Sorghum	nucleus	68.51	26.11
Bra034555.1-P	Field mustard	nucleus	53.59	25.59
Bra037011.1-P	Field mustard	nucleus	59.12	25.54
VIT_15s0107g00320.t01	Wine grape	nucleus	62.98	25.33
PGSC0003DMT400069533	Potato	nucleus, plastid	62.43	24.84
CDX98239	Canola	nucleus	18.23	24.63
Solyc06g072830.2.1	Tomato	nucleus, plastid	61.88	24.62
Solyc03g096870.2.1	Tomato	nucleus	60.22	24.06
PGSC0003DMT400001467	Potato	nucleus	59.12	23.62
Bra005544.1-P	Field mustard	nucleus	56.91	23.46
AT4G33260.1	Thale cress	nucleus	57.46	23.27
AT4G33270.1	Thale cress	nucleus	58.01	22.98
VIT_05s0102g00640.t01	Wine grape	nucleus	50.83	22.28
VIT_05s0102g00550.t01	Wine grape	nucleus	50.83	22.28
VIT_16s0039g02510.t01	Wine grape	nucleus	55.25	22.17
Solyc08g005420.2.1	Tomato	nucleus	54.7	22.1
PGSC0003DMT400047585	Potato	nucleus	54.7	22.1
VIT_05s0102g00680.t01	Wine grape	nucleus	50.28	21.93
VIT_05s0029g01120.t01	Wine grape	nucleus	49.72	21.79
AT5G27080.1	Thale cress	nucleus	52.49	21.49
AT5G27570.1	Thale cress	nucleus	52.49	21.11
AT5G26900.1	Thale cress	nucleus	51.38	20.95
Bra008327.1-P	Field mustard	cytosol, mitochondrion	48.07	20.33
Bra011430.1-P	Field mustard	cytosol	60.77	15.38
EES02145	Sorghum	plastid	35.36	13.28
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	23.76	10.05
OQU93351	Sorghum	nucleus	37.57	9.77
GSMUA_Achr2P19120_001	Banana	cytosol	9.94	6.74
OQU82251	Sorghum	cytosol	0.0	0.0

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1B6PMY8	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KXG27036	ProteinID:KXG27036	ProteinID:KXG27036.1	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	EnsemblPlantsGene:SORBI_3006G202100	SUPFAM:SSF82171	UniParc:UPI00081AC95E
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:55338055..55338826

Molecular Weight (calculated)

20094.7 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.457

Length

181 amino acids

Sequence
(BLAST)

001: MPPLSTGSRN PLAKCYGDRF IPERSAMDMD LAHYLLTEPR KGKENPTARV SPAKVAYRKQ LAEKLLNNRT RILAFRNKPP EPESMLTDPR ADATQSAEKV
101: LDAPELVDDY YLNLLDWGSS NVLSIALGYK VYLWDASSQS VTELVTIDED SGPVTSVSWA PDGRHIAIGL NSSDVQLWDS T

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.