Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001174.1-P
Bra001423.1-P
Bra004677.1-P
Bra005063.1-P
Bra007362.1-P
Bra013534.1-P
Bra015512.1-P
Bra018081.1-P
Bra025616.1-P
Bra026274.1-P
Bra028905.1-P
Bra032414.1-P
Bra033769.1-P
Bra034807.1-P
Bra035062.1-P
Bra038682.1-P
Bra039034.1-P
Bra040242.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G33270.1 Bra015512.1-P AT1G06590.1 20706207
AT4G33270.1 Bra032414.1-P AT1G06590.1 20706207
AT4G33270.1 Bra035062.1-P AT1G78770.1 20706207
AT4G33270.1 Bra025616.1-P AT2G04660.1 20706207
AT4G33270.1 Bra028905.1-P AT2G04660.1 20706207
AT4G33270.1 Bra039034.1-P AT2G20000.1 17944809
AT4G33270.1 Bra039034.1-P AT2G20000.1 20706207
AT4G33270.1 Bra005063.1-P AT2G39090.1 20706207
AT4G33270.1 Bra004677.1-P AT2G42260.1 20706207
AT4G33270.1 Bra001423.1-P AT3G11830.1 20706207
AT4G33270.1 Bra034807.1-P AT3G11830.1 20706207
AT4G33270.1 Bra038682.1-P AT3G11830.1 20706207
AT4G33270.1 Bra018081.1-P AT3G48150.1 20706207
AT4G33270.1 Bra033769.1-P AT3G48150.1 20706207
AT4G33270.1 Bra007362.1-P AT3G57860.1 20706207
AT4G33270.1 Bra013534.1-P AT4G21530.1 20706207
AT4G33270.1 Bra026274.1-P AT4G28230.1 20706207
AT4G33270.1 Bra001174.1-P AT5G26360.1 20706207
AT4G33270.1 Bra040242.1-P AT5G26360.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra037011.1-P Field mustard nucleus 56.92 97.14
CDX68960 Canola nucleus 55.1 95.4
AT4G33270.1 Thale cress nucleus 60.28 94.31
AT4G33260.1 Thale cress nucleus 58.88 94.18
Bra034555.1-P Field mustard nucleus 46.71 88.13
Bra005544.1-P Field mustard nucleus 47.13 76.77
OQU82251 Sorghum cytosol 18.6 76.0
KRH68047 Soybean nucleus 47.55 74.4
KRH44738 Soybean nucleus 45.03 72.85
TraesCS5A01G272600.1 Wheat plastid 46.01 70.45
KXG30937 Sorghum nucleus 46.29 70.28
KRG94456 Soybean cytosol 23.08 70.21
TraesCS5B01G272800.1 Wheat plastid 45.87 70.09
TraesCS5D01G280600.1 Wheat plastid 45.87 70.09
Os02t0700100-01 Rice extracellular 45.87 69.94
TraesCS6B01G296200.1 Wheat plastid 46.15 69.62
TraesCS6A01G268900.1 Wheat plastid 46.15 69.62
TraesCS6D01G246000.1 Wheat plastid 46.01 69.26
Zm00001d016034_P002 Maize nucleus 45.59 69.21
EES06634 Sorghum nucleus 45.73 68.84
Zm00001d000168_P001 Maize plastid 45.45 68.13
Solyc08g005420.2.1 Tomato nucleus 42.52 67.86
PGSC0003DMT400047585 Potato nucleus 42.1 67.19
Bra008327.1-P Field mustard cytosol, mitochondrion 40.14 67.06
TraesCS2B01G461400.1 Wheat nucleus 44.48 65.03
TraesCS2D01G438800.1 Wheat nucleus 44.06 64.68
Os04t0599800-01 Rice nucleus 44.9 63.69
TraesCS2A01G440000.2 Wheat nucleus 43.36 63.27
TraesCS5A01G197800.2 Wheat mitochondrion, plastid 40.98 61.55
TraesCS5B01G185900.1 Wheat mitochondrion, nucleus 40.84 61.34
TraesCS5D01G193100.1 Wheat mitochondrion, nucleus 40.84 61.34
TraesCS6A01G085400.1 Wheat nucleus 32.73 61.26
KXG27036 Sorghum cytosol 15.38 60.77
HORVU5Hr1G074370.15 Barley endoplasmic reticulum, vacuole 39.86 60.0
GSMUA_AchrUn_... Banana cytosol 7.27 59.77
Os09t0242300-00 Rice plastid 39.16 58.58
GSMUA_Achr1P27660_001 Banana mitochondrion 13.01 57.76
GSMUA_Achr1P27670_001 Banana cytosol 4.9 55.56
GSMUA_AchrUn_... Banana cytosol 18.32 54.81
HORVU6Hr1G068080.3 Barley plastid 39.72 53.28
HORVU5Hr1G041780.3 Barley plastid 40.28 53.23
KRH07005 Soybean nucleus 8.95 51.61
GSMUA_Achr1P25940_001 Banana cytosol 21.4 51.52
GSMUA_Achr3P21370_001 Banana cytosol 28.11 50.63
GSMUA_AchrUn_... Banana nucleus 28.39 49.39
GSMUA_AchrUn_... Banana cytosol 24.62 48.35
Zm00001d017725_P001 Maize mitochondrion 21.12 48.24
GSMUA_Achr1P28050_001 Banana cytosol 27.41 48.16
GSMUA_AchrUn_... Banana cytosol 20.0 46.89
Zm00001d005562_P001 Maize plastid 12.59 43.48
Bra000756.1-P Field mustard nucleus 25.45 38.72
Bra006219.1-P Field mustard plastid 26.29 38.68
Bra029426.1-P Field mustard nucleus 25.45 38.32
Bra019347.1-P Field mustard nucleus, plastid 25.17 38.3
GSMUA_AchrUn_... Banana cytosol 15.24 38.11
Bra013655.1-P Field mustard nucleus, plastid 25.04 38.0
TraesCS2D01G118700.1 Wheat cytosol 9.93 33.81
Zm00001d009154_P001 Maize extracellular, plasma membrane, plastid 6.01 29.45
Zm00001d006622_P001 Maize golgi 10.49 22.19
TraesCS2D01G438900.1 Wheat mitochondrion 0.7 1.23
TraesCS2B01G461500.1 Wheat mitochondrion 0.7 1.22
Protein Annotations
Gene3D:1.10.10.10Gene3D:1.25.40.250MapMan:13.3.4.1.4MapMan:17.4.1.3.11Gene3D:2.130.10.10InterPro:ARM-type_fold
InterPro:Apc4_WD40_domEnsemblPlantsGene:Bra011430EnsemblPlants:Bra011430.1EnsemblPlants:Bra011430.1-PInterPro:CSN8_PSD8_EIF3KInterPro:Cdc20/Fizzy
GO:GO:0001731GO:GO:0001732GO:GO:0002183GO:GO:0003674GO:GO:0003676GO:GO:0003723
GO:GO:0003743GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005852GO:GO:0006412GO:GO:0006413GO:GO:0006446GO:GO:0006464
GO:GO:0008135GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987GO:GO:0010997
GO:GO:0016043GO:GO:0016282GO:GO:0019538GO:GO:0030234GO:GO:0033290GO:GO:0043022
GO:GO:0097027GO:GO:1904668InterPro:IPR000717InterPro:IPR001680InterPro:IPR015943InterPro:IPR016020
InterPro:IPR017986InterPro:IPR036388UniProt:M4D4M6HAMAP:MF_03010InterPro:PCI_domPFAM:PF00400
PFAM:PF10075PFAM:PF12894ScanProsite:PS00678PFscan:PS50082PFscan:PS50250PFscan:PS50294
PANTHER:PTHR19918PANTHER:PTHR19918:SF30SMART:SM00320SUPFAM:SSF46785SUPFAM:SSF48371SUPFAM:SSF50978
InterPro:Transl_init_fac_sub12_N_eukUniParc:UPI0002545E91InterPro:WD40/YVTN_repeat-like_dom_sfInterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sfInterPro:WH-like_DNA-bd_sfInterPro:WH_DNA-bd_sfInterPro:eIF3kSEG:seg:
Description
AT4G33270 (E=1e-249) CDC20.1 | CDC20.1; signal transducer
Coordinates
chrA01:+:2197632..2201638
Molecular Weight (calculated)
79858.6 Da
IEP (calculated)
7.187
GRAVY (calculated)
-0.412
Length
715 amino acids
Sequence
(BLAST)
001: MDAGMNTSTH LKAQARCPLQ EHFLPRKSSK ENLDRFIPNR SAMDFDYAHY ALTEGRNGKD QVTAAVSSPS REAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPTDHSAS LLHQQPKSVK PRRYIPQTSE RTLDAPDIVD DFYLNLLDWG SANVLAIALG HTVYLWDASS GSTSELVTID EEKGPVTSIN WAPDGRHVAL
201: GLNNSEVQLW DSGSNRQLRT LKGCHQSRVG SLAWNNHILT TGGMDGQIVN NDVRIRSHVV ETYRGHTQEV CGLKWSGSGQ QLASGGNDNV VHIWDRSAAS
301: SNSTTQYLHR LEEHTSAVKA LAWCPFQANL LATGGGGGDR TIKFWNTHTG ACLNSVDTGS QVCSLLWSKN ERELLSSHGF TQNQLTLWKY PSMVKMAELT
401: GHTSRVLYMA QSPDGCTVAS AAGDETLRFW NVFGVPETAK KAAPKATHEP FSHVNLIAQL IKRRRFGTKT LDPSPPSTVI NRARKREMGK EMESPKEQSS
501: YTVEQLVAVN PFNPEILPDL ENYVNEQVTS QTYSLDANLC LLRLYQFEPE RMNTHIVARI LLKALMAMPA PDFSLCLFLI PERVQMEEQF KTLIVLSHYL
601: ETGRFQQFWD EAAKNRHILE SVPGFEQAIQ AYASHLLSLS YQKVPRSVLA EAVNMDGASL DKFIEHQVAN SGWIVAKEDG SIVLPQNEFN RPELKKNPGE
701: NVSLEHIARI FPILG
Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)
001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
Arabidopsis Description
CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.