Factsheet for Os04t0599800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0247200-01
Os02t0656300-01
Os02t0785900-00
Os03t0236966-00
Os04t0484800-01
Os04t0551800-01
Os05t0149900-01
Os06t0538000-01
Os06t0622500-00
Os06t0679100-00
Os06t0687700-01
Os12t0626300-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	Os12t0626300-01	AT1G06590.1	20706207
AT4G33270.1	Os03t0236966-00	AT1G78770.1	20706207
AT4G33270.1	Os04t0484800-01	AT2G04660.1	20706207
AT4G33270.1	Os06t0622500-00	AT2G20000.1	17944809
AT4G33270.1	Os06t0622500-00	AT2G20000.1	20706207
AT4G33270.1	Os05t0149900-01	AT2G39090.1	20706207
AT4G33270.1	Os06t0687700-01	AT3G11830.1	20706207
AT4G33270.1	Os02t0656300-01	AT3G48150.1	20706207
AT4G33270.1	Os06t0679100-00	AT3G48150.1	20706207
AT4G33270.1	Os02t0785900-00	AT4G21530.1	20706207
AT4G33270.1	Os02t0247200-01	AT5G26360.1	20706207
AT4G33270.1	Os06t0538000-01	AT5G26360.1	20706207
AT5G26900.1	Os06t0622500-00	AT2G20000.1	17944809
AT5G27080.1	Os06t0687700-01	AT3G11830.1	20706207
AT5G27080.1	Os04t0551800-01	AT3G20050.1	20706207
AT5G27080.1	Os02t0247200-01	AT5G26360.1	20706207
AT5G27080.1	Os06t0538000-01	AT5G26360.1	20706207
AT5G27570.1	Os06t0622500-00	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0700100-01	Rice	extracellular	83.13	89.34
TraesCS2B01G461400.1	Wheat	nucleus	76.59	78.94
TraesCS2D01G438800.1	Wheat	nucleus	75.99	78.64
TraesCS2A01G440000.2	Wheat	nucleus	75.99	78.16
PGSC0003DMT400069533	Potato	nucleus, plastid	67.86	75.16
Solyc03g096870.2.1	Tomato	nucleus	67.46	75.06
Solyc06g072830.2.1	Tomato	nucleus, plastid	67.66	74.95
PGSC0003DMT400001467	Potato	nucleus	67.26	74.83
VIT_15s0107g00320.t01	Wine grape	nucleus	65.87	73.78
TraesCS6A01G085400.1	Wheat	nucleus	54.56	71.99
VIT_05s0102g00640.t01	Wine grape	nucleus	58.53	71.43
VIT_05s0102g00550.t01	Wine grape	nucleus	58.53	71.43
VIT_05s0029g01120.t01	Wine grape	nucleus	58.53	71.43
AT4G33260.1	Thale cress	nucleus	63.1	71.14
VIT_05s0102g00680.t01	Wine grape	nucleus	58.53	71.08
AT4G33270.1	Thale cress	nucleus	63.29	69.8
Bra037011.1-P	Field mustard	nucleus	57.94	69.69
VIT_16s0039g02510.t01	Wine grape	nucleus	61.11	68.29
Os09t0242300-00	Rice	plastid	64.48	67.99
Bra034555.1-P	Field mustard	nucleus	49.6	65.96
PGSC0003DMT400047585	Potato	nucleus	57.94	65.18
Bra005544.1-P	Field mustard	nucleus	56.75	65.15
AT5G27570.1	Thale cress	nucleus	57.94	64.89
Solyc08g005420.2.1	Tomato	nucleus	57.34	64.51
AT5G27080.1	Thale cress	nucleus	56.15	64.03
AT5G26900.1	Thale cress	nucleus	56.15	63.74
Bra008327.1-P	Field mustard	cytosol, mitochondrion	52.18	61.45
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	46.23	54.44
KRH08491	Soybean	cytosol	14.48	52.14
VIT_16s0039g02620.t01	Wine grape	cytosol	23.61	51.29
Bra011430.1-P	Field mustard	cytosol	63.69	44.9
CDX98239	Canola	nucleus	11.31	42.54
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	37.3	39.33
Os03t0123300-01	Rice	plastid	37.5	36.14
GSMUA_Achr2P19120_001	Banana	cytosol	16.27	30.71
TraesCS2D01G438900.1	Wheat	mitochondrion	0.99	1.23
TraesCS2B01G461500.1	Wheat	mitochondrion	0.99	1.22
Os01t0973000-01	Rice	cytosol	0.4	0.71

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EntrezGene:4336870	EMBL:AK103675	InterPro:Apc4_WD40_dom	ProteinID:BAF15668.1
ProteinID:BAS90825.1	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os04g0599800
EnsemblPlants:Os04t0599800-01	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	UniProt:Q0JAG9	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998
UniParc:UPI0000DD924D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_015635405.1

Description

OsWD40-109, CDC20WD40 repeat-like domain containing protein. (Os04t0599800-01)

Coordinates

chr4:+:30267833..30270707

Molecular Weight (calculated)

55541.7 Da

IEP (calculated)

8.224

GRAVY (calculated)

-0.350

Length

504 amino acids

Sequence
(BLAST)

001: MDAGSHSISS EKSSRYVAPR QPLQEAGSRP YMPSLSTASR NPSAKCYGDR FIPDRSAMDM DMAHYLLTEP RKDKENAAAS PAKEAYRKLL AEKILNNRTR
101: ILSFRNKPPE PESILTELRA DAASIQAKPA KQRRYIPQSA ERTLDAPELV DDYYLNLLDW GSSNVLSIAL GNSVYLWDAT NSSTSELVTV DEDNGPVTSV
201: SWAPDGRHIA VGLNSSDVQL WDTSSNRLLR TMRGVHDSRV GSLAWNNNIL TTGGMDGKIV NNDVRIRNHV VQTYQGHQQE VCGLKWSGSG QQLASGGNDN
301: LLHIWDVSMA SSMPSAGRTQ WLHRLEDHLA AVKALAWCPF QSNLLASGGG GSDRCIKFWN THTGACLNSI DTGSQVCSLV WNKNERELLS SHGFAQNQLT
401: LWKYPSMVKM AELTGHTSRV LFTAQVIFCS LYLPFKLTNI ALNRLLITCL VVILQSPDGL TVASAAADET LRFWNVFGAP EAPKTATKGS HTGMFNNSNH
501: IHIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.