Factsheet for Bra005544.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001174.1-P
Bra001423.1-P
Bra001773.1-P
Bra034807.1-P
Bra035820.1-P
Bra038252.1-P
Bra038682.1-P
Bra039034.1-P
Bra040242.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	Bra039034.1-P	AT2G20000.1	17944809
AT5G27080.1	Bra001423.1-P	AT3G11830.1	20706207
AT5G27080.1	Bra034807.1-P	AT3G11830.1	20706207
AT5G27080.1	Bra038682.1-P	AT3G11830.1	20706207
AT5G27080.1	Bra001773.1-P	AT3G20050.1	20706207
AT5G27080.1	Bra035820.1-P	AT3G20050.1	20706207
AT5G27080.1	Bra038252.1-P	AT3G20050.1	20706207
AT5G27080.1	Bra001174.1-P	AT5G26360.1	20706207
AT5G27080.1	Bra040242.1-P	AT5G26360.1	20706207
AT5G27570.1	Bra039034.1-P	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52543	Canola	nucleus	94.99	97.43
CDY59110	Canola	nucleus	90.43	94.75
CDY59109	Canola	nucleus	90.43	94.75
Bra037011.1-P	Field mustard	nucleus	70.39	73.75
Bra034555.1-P	Field mustard	nucleus	61.5	71.24
OQU82251	Sorghum	cytosol	27.11	68.0
AT5G27080.1	Thale cress	nucleus	66.51	66.06
AT5G27570.1	Thale cress	nucleus	67.43	65.78
AT5G26900.1	Thale cress	nucleus	66.06	65.32
KXG30937	Sorghum	nucleus	69.02	64.33
KRH68047	Soybean	nucleus	66.74	64.11
TraesCS5D01G280600.1	Wheat	plastid	67.88	63.68
TraesCS5A01G272600.1	Wheat	plastid	67.65	63.6
Bra008327.1-P	Field mustard	cytosol, mitochondrion	61.96	63.55
Os02t0700100-01	Rice	extracellular	67.88	63.54
KRH44738	Soybean	nucleus	63.78	63.35
TraesCS5B01G272800.1	Wheat	plastid	67.43	63.25
TraesCS6A01G268900.1	Wheat	plastid	68.11	63.08
EES06634	Sorghum	nucleus	68.11	62.95
TraesCS6B01G296200.1	Wheat	plastid	67.88	62.87
Zm00001d016034_P002	Maize	nucleus	67.2	62.63
TraesCS6D01G246000.1	Wheat	plastid	67.65	62.53
Zm00001d000168_P001	Maize	plastid	66.97	61.64
Solyc08g005420.2.1	Tomato	nucleus	62.64	61.38
KRG94456	Soybean	cytosol	32.57	60.85
PGSC0003DMT400047585	Potato	nucleus	61.5	60.27
TraesCS2B01G461400.1	Wheat	nucleus	66.29	59.51
TraesCS2D01G438800.1	Wheat	nucleus	65.15	58.73
TraesCS2A01G440000.2	Wheat	nucleus	64.69	57.96
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	61.96	57.14
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	61.96	57.14
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	61.73	56.93
KXG27036	Sorghum	cytosol	23.46	56.91
Os04t0599800-01	Rice	nucleus	65.15	56.75
Os09t0242300-00	Rice	plastid	60.36	55.44
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	59.91	55.37
TraesCS6A01G085400.1	Wheat	nucleus	47.61	54.71
GSMUA_AchrUn_...	Banana	cytosol	10.48	52.87
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	51.48	52.8
GSMUA_Achr1P27660_001	Banana	mitochondrion	19.36	52.8
GSMUA_AchrUn_...	Banana	cytosol	28.25	51.88
GSMUA_Achr1P27670_001	Banana	cytosol	7.29	50.79
HORVU5Hr1G041780.3	Barley	plastid	61.28	49.72
GSMUA_Achr1P25940_001	Banana	cytosol	33.03	48.82
GSMUA_Achr3P21370_001	Banana	cytosol	43.74	48.36
GSMUA_AchrUn_...	Banana	nucleus	44.87	47.93
HORVU6Hr1G068080.3	Barley	plastid	58.09	47.84
Bra011430.1-P	Field mustard	cytosol	76.77	47.13
KRH07005	Soybean	nucleus	13.21	46.77
GSMUA_AchrUn_...	Banana	cytosol	37.59	45.33
Zm00001d017725_P001	Maize	mitochondrion	32.12	45.05
GSMUA_Achr1P28050_001	Banana	cytosol	41.69	44.96
GSMUA_AchrUn_...	Banana	cytosol	30.07	43.28
Zm00001d005562_P001	Maize	plastid	18.45	39.13
Bra000756.1-P	Field mustard	nucleus	40.77	38.09
Bra006219.1-P	Field mustard	plastid	41.91	37.86
Bra019347.1-P	Field mustard	nucleus, plastid	40.09	37.45
Bra029426.1-P	Field mustard	nucleus	40.32	37.26
GSMUA_AchrUn_...	Banana	cytosol	24.15	37.06
Bra013655.1-P	Field mustard	nucleus, plastid	39.64	36.94
TraesCS2D01G118700.1	Wheat	cytosol	15.95	33.33
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	8.88	26.71
Zm00001d006622_P001	Maize	golgi	14.35	18.64
TraesCS2D01G438900.1	Wheat	mitochondrion	0.91	0.98
TraesCS2B01G461500.1	Wheat	mitochondrion	0.91	0.98

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlantsGene:Bra005544	EnsemblPlants:Bra005544.1	EnsemblPlants:Bra005544.1-P
InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027
GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4CMV6	PFAM:PF00400
PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00025474F7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT4G33260 (E=9e-181) CDC20.2 | CDC20.2; signal transducer

Coordinates

chrA05:+:6138846..6140165

Molecular Weight (calculated)

48902.8 Da

IEP (calculated)

8.401

GRAVY (calculated)

-0.504

Length

439 amino acids

Sequence
(BLAST)

001: MNAGMMNWKE HGRKIPKENL DRFIPNRSAM DFDFAHHALT EALIEARDGK KEEPLELSPS KEAYRKRLAE TLGLNRTRIL AFRNKPQPPP HSHYYSHHQQ
101: QQPLKPRRRR IPQSCSKVLD APNMLDDFYL NLLDWGSRNV LAIALGHTLY LWDASTGSVS EFVTIEEDQG PITSISWAPD GSHVALGLDN SQVQLWDSSS
201: NRKIRTLNGV HHSRVGSLAW NNHILTTGGM DGMIVNNDVR IRSHVVDTYR GHTGEICGLK WSGSGMQLAS GGNDNVVHVW DRSSASPTHR LEEHTSAVKA
301: LAWCPFQSNL LATGGGGIDG AIKFWNTHTG ACLNSLDTGS QVCALLWSKN DRELLSSHGF SHNHLALWKY PSLVKMAELT GHTSRVLYMT QSPDGCTVAS
401: AAGDESLRFW DVFGMPETAK KPDQKAAAHE PFSRVPRIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.