Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 92.06 | 66.67 |
| GSMUA_Achr1P27660_001 | Banana | mitochondrion | 92.06 | 36.02 |
| GSMUA_AchrUn_... | Banana | cytosol | 95.24 | 25.1 |
| GSMUA_Achr1P25940_001 | Banana | cytosol | 93.65 | 19.87 |
| CDY71694 | Canola | nucleus | 53.97 | 19.65 |
| GSMUA_AchrUn_... | Banana | cytosol | 73.02 | 15.08 |
| CDY59111 | Canola | nucleus | 50.79 | 14.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 93.65 | 14.36 |
| GSMUA_AchrUn_... | Banana | cytosol | 74.6 | 12.91 |
| GSMUA_Achr1P28050_001 | Banana | cytosol | 74.6 | 11.55 |
| GSMUA_Achr3P21370_001 | Banana | cytosol | 60.32 | 9.57 |
| CDY13491 | Canola | cytosol | 55.56 | 9.51 |
| Bra034555.1-P | Field mustard | nucleus | 55.56 | 9.23 |
| KRH44738 | Soybean | nucleus | 58.73 | 8.37 |
| Bra037011.1-P | Field mustard | nucleus | 55.56 | 8.35 |
| CDX68960 | Canola | nucleus | 53.97 | 8.23 |
| AT5G27945.1 | Thale cress | cytosol, plastid, vacuole | 55.56 | 8.18 |
| KRH68047 | Soybean | nucleus | 58.73 | 8.1 |
| AT4G33260.1 | Thale cress | nucleus | 57.14 | 8.05 |
| AT4G33270.1 | Thale cress | nucleus | 57.14 | 7.88 |
| GSMUA_Achr5P18020_001 | Banana | nucleus, plastid | 58.73 | 7.82 |
| AT5G27570.1 | Thale cress | nucleus | 55.56 | 7.78 |
| Bra008327.1-P | Field mustard | cytosol, mitochondrion | 52.38 | 7.71 |
| CDY59110 | Canola | nucleus | 50.79 | 7.64 |
| CDY59109 | Canola | nucleus | 50.79 | 7.64 |
| GSMUA_Achr10P... | Banana | nucleus | 49.21 | 7.62 |
| CDY52543 | Canola | nucleus | 50.79 | 7.48 |
| Bra005544.1-P | Field mustard | nucleus | 50.79 | 7.29 |
| GSMUA_Achr8P14580_001 | Banana | nucleus, plastid | 55.56 | 7.28 |
| GSMUA_Achr11P... | Banana | plastid | 52.38 | 6.96 |
| PGSC0003DMT400047585 | Potato | nucleus | 49.21 | 6.92 |
| KRG94456 | Soybean | cytosol | 25.4 | 6.81 |
| AT5G27080.1 | Thale cress | nucleus | 47.62 | 6.79 |
| AT5G26900.1 | Thale cress | nucleus | 47.62 | 6.76 |
| Solyc08g005420.2.1 | Tomato | nucleus | 47.62 | 6.7 |
| CDY44519 | Canola | cytosol, nucleus | 53.97 | 6.55 |
| GSMUA_Achr11P... | Banana | mitochondrion | 42.86 | 6.4 |
| GSMUA_Achr5P07090_001 | Banana | plastid | 41.27 | 5.73 |
| CDY46124 | Canola | cytosol | 55.56 | 5.65 |
| GSMUA_Achr11P... | Banana | plastid | 42.86 | 5.56 |
| CDY26774 | Canola | mitochondrion | 9.52 | 5.45 |
| GSMUA_Achr11P... | Banana | plastid | 41.27 | 5.3 |
| Bra011430.1-P | Field mustard | cytosol | 55.56 | 4.9 |
| GSMUA_Achr2P19120_001 | Banana | cytosol | 12.7 | 3.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 7.94 | 1.75 |
| CDY28289 | Canola | cytosol, extracellular, mitochondrion, plastid | 4.76 | 1.55 |
| KRH07005 | Soybean | nucleus | 1.59 | 0.81 |
| CDY28290 | Canola | cytosol, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | InterPro:Cdc20/Fizzy | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010997 | GO:GO:0019538 |
| GO:GO:0030234 | GO:GO:0097027 | GO:GO:1904668 | EnsemblPlantsGene:GSMUA_Achr1G27670_001 | EnsemblPlants:GSMUA_Achr1P27670_001 | EnsemblPlants:GSMUA_Achr1T27670_001 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:M0S3M4 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19918 | PANTHER:PTHR19918:SF8 | SUPFAM:SSF50978 | UniParc:UPI0002969A17 | InterPro:WD40/YVTN_repeat-like_dom_sf |
| InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | : | : |
Description
Protein FIZZY-RELATED 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G27670_001]
Coordinates
chr1:-:25176378..25176569
Molecular Weight (calculated)
6893.3 Da
IEP (calculated)
9.190
GRAVY (calculated)
-0.027
Length
63 amino acids
Sequence
(BLAST)
(BLAST)
1: MTRKAELFGH SSRVLYLVGS PLGGVVASAA EDETLKFWNV FETPKPPKPE ASTVPFAQFS VIR
001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR
Arabidopsis Description
CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.