Factsheet for GSMUA_Achr5P18020_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	plastid	92.18	91.98
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	88.79	87.32
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	72.3	71.85
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	72.09	71.64
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	72.09	71.64
Os09t0242300-00	Rice	plastid	67.65	66.95
HORVU5Hr1G041780.3	Barley	plastid	71.25	62.29
GSMUA_Achr1P27660_001	Banana	mitochondrion	20.93	61.49
GSMUA_AchrUn_...	Banana	cytosol	11.21	60.92
GSMUA_Achr1P27670_001	Banana	cytosol	7.82	58.73
GSMUA_AchrUn_...	Banana	cytosol	29.18	57.74
GSMUA_Achr1P25940_001	Banana	cytosol	33.83	53.87
GSMUA_Achr3P21370_001	Banana	cytosol	44.19	52.64
GSMUA_AchrUn_...	Banana	nucleus	45.03	51.82
GSMUA_Achr1P28050_001	Banana	cytosol	43.13	50.12
GSMUA_AchrUn_...	Banana	cytosol	38.48	50.0
GSMUA_AchrUn_...	Banana	cytosol	31.71	49.18
KRH08491	Soybean	cytosol	14.38	48.57
GSMUA_Achr10P...	Banana	nucleus	41.65	48.4
GSMUA_Achr11P...	Banana	mitochondrion	38.27	42.89
CDX98239	Canola	nucleus	11.84	41.79
GSMUA_Achr5P07090_001	Banana	plastid	39.11	40.75
GSMUA_AchrUn_...	Banana	cytosol	23.04	38.11
GSMUA_Achr11P...	Banana	plastid	38.9	37.86
GSMUA_Achr11P...	Banana	plastid	35.52	34.22
GSMUA_Achr2P19120_001	Banana	cytosol	17.12	30.34

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:GSMUA_Achr5G18020_001	EnsemblPlants:GSMUA_Achr5P18020_001
EnsemblPlants:GSMUA_Achr5T18020_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M0SZI1	PFAM:PF00400
PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029651DE	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Putative Anaphase-promoting complex subunit cdc20 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18020_001]

Coordinates

chr5:-:19267969..19269856

Molecular Weight (calculated)

52089.1 Da

IEP (calculated)

8.474

GRAVY (calculated)

-0.496

Length

473 amino acids

Sequence
(BLAST)

001: MDAGSFSSSV SSEKGRSASR RSALRDVPSR PFLPSMHTSS RNPSSWQTGD RFIPDRSAMD MDVAYYLLTE PRKEKENAVA ASPSKEAYRK LLAENLLKNR
101: TRILTFKNKP PPPSQPFFQE VDVSSHHLKP AKQRRYIPQS AERTLDAPDI VDDYYLNLMD WGSSNVLSIA LGNTVYLWDA SDGSTSELMT VDDDAGPVTS
201: VSWAPDGRHI AVGLNSSDIQ LWDSSSNRLM RTLRGVHGSR VGSLAWNNNI LTTGGMDGMI VNNDVRMRSH VIQRYRGHQQ EVCGLKWSGS GQQLASGGND
301: NLLHIWDVSM ASSNPSPGQN QWLHRFEDHM AAVKALAWCP FQSNLLASGG GGGDRCIKFW NTHTGACLNS VDTGSQVCAL LWNKNERELL SSHGFTQNQL
401: TLWKYPSMVK IAELTGHTSR VLFMAQSPDG GTVASAAGDE TIRFWNVFGT PEPPKPAAKS TSTGPFSSFN HIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.