Factsheet for HORVU5Hr1G041780.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G004870.2
HORVU0Hr1G004910.1
HORVU0Hr1G004980.2
HORVU0Hr1G027080.4
HORVU1Hr1G021230.8
HORVU1Hr1G052730.26
HORVU2Hr1G083840.8
HORVU4Hr1G064670.6
HORVU5Hr1G005770.3
HORVU6Hr1G025270.1
HORVU6Hr1G062870.1
HORVU7Hr1G044070.2
HORVU7Hr1G080310.1
HORVU7Hr1G093620.9

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	HORVU5Hr1G005770.3	AT1G06590.1	20706207
AT4G33270.1	HORVU4Hr1G064670.6	AT1G78770.1	20706207
AT4G33270.1	HORVU0Hr1G004870.2	AT2G04660.1	20706207
AT4G33270.1	HORVU0Hr1G004910.1	AT2G04660.1	20706207
AT4G33270.1	HORVU0Hr1G004980.2	AT2G04660.1	20706207
AT4G33270.1	HORVU2Hr1G083840.8	AT2G04660.1	20706207
AT4G33270.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809
AT4G33270.1	HORVU7Hr1G093620.9	AT2G20000.1	20706207
AT4G33270.1	HORVU1Hr1G021230.8	AT2G39090.1	20706207
AT4G33270.1	HORVU6Hr1G025270.1	AT3G11830.1	20706207
AT4G33270.1	HORVU0Hr1G027080.4	AT3G48150.1	20706207
AT4G33270.1	HORVU6Hr1G062870.1	AT3G48150.1	20706207
AT4G33270.1	HORVU7Hr1G080310.1	AT5G26360.1	20706207
AT5G26900.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809
AT5G27080.1	HORVU6Hr1G025270.1	AT3G11830.1	20706207
AT5G27080.1	HORVU1Hr1G052730.26	AT3G20050.1	20706207
AT5G27080.1	HORVU7Hr1G044070.2	AT3G20050.1	20706207
AT5G27080.1	HORVU7Hr1G080310.1	AT5G26360.1	20706207
AT5G27570.1	HORVU7Hr1G093620.9	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	80.59	91.6
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	80.59	91.6
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	80.04	90.97
Os09t0242300-00	Rice	plastid	66.17	74.9
GSMUA_Achr5P18020_001	Banana	nucleus, plastid	62.29	71.25
GSMUA_Achr11P...	Banana	plastid	62.11	70.89
GSMUA_Achr8P14580_001	Banana	nucleus, plastid	60.81	68.4
VIT_15s0107g00320.t01	Wine grape	nucleus	56.01	67.33
VIT_05s0102g00640.t01	Wine grape	nucleus	50.46	66.1
VIT_05s0102g00550.t01	Wine grape	nucleus	50.46	66.1
VIT_05s0029g01120.t01	Wine grape	nucleus	50.28	65.86
VIT_05s0102g00680.t01	Wine grape	nucleus	50.46	65.78
PGSC0003DMT400069533	Potato	nucleus, plastid	55.27	65.71
Solyc06g072830.2.1	Tomato	nucleus, plastid	54.9	65.27
PGSC0003DMT400001467	Potato	nucleus	54.53	65.12
Solyc03g096870.2.1	Tomato	nucleus	54.34	64.9
AT4G33260.1	Thale cress	nucleus	53.05	64.21
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	55.82	63.58
Bra037011.1-P	Field mustard	nucleus	48.98	63.25
AT4G33270.1	Thale cress	nucleus	53.42	63.24
VIT_16s0039g02510.t01	Wine grape	nucleus	52.5	62.97
Bra005544.1-P	Field mustard	nucleus	49.72	61.28
PGSC0003DMT400047585	Potato	nucleus	49.91	60.27
Bra034555.1-P	Field mustard	nucleus	42.14	60.16
Solyc08g005420.2.1	Tomato	nucleus	49.54	59.82
AT5G27570.1	Thale cress	nucleus	49.17	59.11
AT5G26900.1	Thale cress	nucleus	48.24	58.78
AT5G27080.1	Thale cress	nucleus	47.87	58.6
Bra008327.1-P	Field mustard	cytosol, mitochondrion	44.36	56.07
HORVU6Hr1G068080.3	Barley	plastid	51.57	52.35
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	40.11	50.7
VIT_16s0039g02620.t01	Wine grape	cytosol	20.7	48.28
KRH08491	Soybean	cytosol	11.28	43.57
CDX98239	Canola	nucleus	9.98	40.3
Bra011430.1-P	Field mustard	cytosol	53.23	40.28
HORVU4Hr1G084710.1	Barley	cytosol, mitochondrion	33.64	32.33
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	34.2	31.52

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	UniProt:A0A287QYP3	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	EnsemblPlantsGene:HORVU5Hr1G041780
EnsemblPlants:HORVU5Hr1G041780.3	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PFAM:PF12894
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF12	InterPro:Quinoprotein_ADH-like_supfam
SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI000B484790	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:+:317166496..317170444

Molecular Weight (calculated)

59800.1 Da

IEP (calculated)

10.085

GRAVY (calculated)

-0.433

Length

541 amino acids

Sequence
(BLAST)

001: NTPNPPETSG GEILRASSQL TSIASVPRHA RTSRFPSIGS CISLSRRAAG CLILREGGFL AVPRPWRRRA PVRPGRRSAA GPGCVRRRPW RWPARGRRTC
101: RPSAPTPRTR PPNATGDRFI PDRSAMDMDM AYYLLTEPKK DKENEAVVSP SKEAYRRLLA EKLLGSRTRI LAFRNKPPEP EGMRPQILFE TPTSSQTKPT
201: KQRRKIPQFA ERTLDAPGVV DDYYLNVLDW GSKNVVSVAL ENTLYLWNAS DSSTSELVTV DDDYGPITSV SWACEGQHIA VGLNSSDIQL WDTSSNRMLR
301: TLRGVHESRV GSLAWNSSIL TSGGMDGKIV NNDVRMRSHM VQTYRGHEAE VCGLRWSGSL QQLASGGNDN LVHIWDASMA SSNPSLGYNR WLHRFSDHLA
401: AVKALAWCPF QSNLLASGGG GNDRCIKFWN THTGLCLNSV DTGAQVCALL WNKNEKELLS ACGFVQKPLT LWKYPSMVKL AELEGHTSRV LCLAQSPDGS
501: TVASVAADET LRFWNVFGTS EAPKPAAKTV HTGMFSFTHI R

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.