Factsheet for Bra008327.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001174.1-P
Bra001423.1-P
Bra001773.1-P
Bra034807.1-P
Bra035820.1-P
Bra038252.1-P
Bra038682.1-P
Bra039034.1-P
Bra040242.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26900.1	Bra039034.1-P	AT2G20000.1	17944809
AT5G27080.1	Bra001423.1-P	AT3G11830.1	20706207
AT5G27080.1	Bra034807.1-P	AT3G11830.1	20706207
AT5G27080.1	Bra038682.1-P	AT3G11830.1	20706207
AT5G27080.1	Bra001773.1-P	AT3G20050.1	20706207
AT5G27080.1	Bra035820.1-P	AT3G20050.1	20706207
AT5G27080.1	Bra038252.1-P	AT3G20050.1	20706207
AT5G27080.1	Bra001174.1-P	AT5G26360.1	20706207
AT5G27080.1	Bra040242.1-P	AT5G26360.1	20706207
AT5G27570.1	Bra039034.1-P	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44519	Canola	cytosol, nucleus	90.89	74.95
OQU82251	Sorghum	cytosol	27.34	66.86
Bra037011.1-P	Field mustard	nucleus	62.38	63.72
Bra005544.1-P	Field mustard	nucleus	63.55	61.96
Bra034555.1-P	Field mustard	nucleus	54.44	61.48
AT5G27080.1	Thale cress	nucleus	62.15	60.18
AT5G27570.1	Thale cress	nucleus	63.08	60.0
AT5G26900.1	Thale cress	nucleus	61.92	59.68
Solyc08g005420.2.1	Tomato	nucleus	60.05	57.37
KRG94456	Soybean	cytosol	31.31	57.02
KRH44738	Soybean	nucleus	58.41	56.56
TraesCS5A01G272600.1	Wheat	plastid	61.45	56.32
PGSC0003DMT400047585	Potato	nucleus	58.88	56.25
KRH68047	Soybean	nucleus	60.05	56.24
TraesCS5D01G280600.1	Wheat	plastid	61.45	56.2
TraesCS5B01G272800.1	Wheat	plastid	60.98	55.77
KXG30937	Sorghum	nucleus	61.22	55.63
TraesCS6A01G268900.1	Wheat	plastid	61.45	55.49
TraesCS6B01G296200.1	Wheat	plastid	61.45	55.49
Os02t0700100-01	Rice	extracellular	60.75	55.44
Zm00001d016034_P002	Maize	nucleus	60.98	55.41
TraesCS6D01G246000.1	Wheat	plastid	61.22	55.16
EES06634	Sorghum	nucleus	61.22	55.16
Zm00001d000168_P001	Maize	plastid	61.45	55.14
TraesCS2D01G438800.1	Wheat	nucleus	60.75	53.39
TraesCS2B01G461400.1	Wheat	nucleus	60.75	53.17
GSMUA_AchrUn_...	Banana	cytosol	10.75	52.87
TraesCS2A01G440000.2	Wheat	nucleus	60.51	52.86
GSMUA_Achr1P27670_001	Banana	cytosol	7.71	52.38
Os04t0599800-01	Rice	nucleus	61.45	52.18
GSMUA_Achr1P27660_001	Banana	mitochondrion	19.39	51.55
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	56.54	50.84
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	56.54	50.84
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	56.31	50.63
GSMUA_AchrUn_...	Banana	cytosol	27.8	49.79
TraesCS6A01G085400.1	Wheat	nucleus	44.16	49.48
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	49.07	49.07
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	54.21	48.84
Os09t0242300-00	Rice	plastid	53.97	48.33
KXG27036	Sorghum	cytosol	20.33	48.07
GSMUA_Achr1P25940_001	Banana	cytosol	32.94	47.47
GSMUA_Achr3P21370_001	Banana	cytosol	42.99	46.35
GSMUA_AchrUn_...	Banana	cytosol	38.32	45.05
GSMUA_AchrUn_...	Banana	nucleus	42.99	44.77
GSMUA_Achr1P28050_001	Banana	cytosol	42.29	44.47
HORVU5Hr1G041780.3	Barley	plastid	56.07	44.36
HORVU6Hr1G068080.3	Barley	plastid	54.67	43.9
KRH07005	Soybean	nucleus	12.62	43.55
GSMUA_AchrUn_...	Banana	cytosol	30.84	43.28
Zm00001d017725_P001	Maize	mitochondrion	30.84	42.17
Bra011430.1-P	Field mustard	cytosol	67.06	40.14
Bra019347.1-P	Field mustard	nucleus, plastid	41.36	37.66
Bra006219.1-P	Field mustard	plastid	42.52	37.45
Bra013655.1-P	Field mustard	nucleus, plastid	40.89	37.16
Bra029426.1-P	Field mustard	nucleus	41.12	37.05
Bra000756.1-P	Field mustard	nucleus	39.95	36.38
Zm00001d005562_P001	Maize	plastid	17.29	35.75
GSMUA_AchrUn_...	Banana	cytosol	23.13	34.62
TraesCS2D01G118700.1	Wheat	cytosol	13.55	27.62
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	7.71	22.6
Zm00001d006622_P001	Maize	golgi	13.32	16.86
TraesCS2D01G438900.1	Wheat	mitochondrion	0.93	0.98
TraesCS2B01G461500.1	Wheat	mitochondrion	0.93	0.98

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlantsGene:Bra008327	EnsemblPlants:Bra008327.1	EnsemblPlants:Bra008327.1-P
InterPro:Cdc20/Fizzy	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234
GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M4CVT0
PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918
PANTHER:PTHR19918:SF30	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998	UniParc:UPI00025462E7	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	SEG:seg	:	:

Description

AT4G33260 (E=3e-153) CDC20.2 | CDC20.2; signal transducer

Coordinates

chrA02:-:14733050..14734423

Molecular Weight (calculated)

47857.6 Da

IEP (calculated)

8.429

GRAVY (calculated)

-0.419

Length

428 amino acids

Sequence
(BLAST)

001: MNTCRIVLQR RFLPVSNSNK EKFDRFIPNR AAMDFDYAHL ALMEEREEEE EEVSSSRKAY RKQLAETMGL NRTRILAFTN KPPSSTSLHH QHQHQHEPPR
101: RIPQRPERTL DAPGLVDDFY LNVLDWSSAN VLAVALANSV CLWDASTGSV TTLVTYGEDQ GPVTSLNWAH DGINLGVGLN NGQVHIWDCV TKTLLRTLQG
201: FHHTRVGSLA WNSHVLTTGG MDGRIFNNDV RFMSYPVSTY KGHTQEVCGL KWSASGQQLA SGGNDRLVHI WDRSTCTQWL HRLRGHTSAV KALAWCPFQS
301: DLLASGGGAE DRKIKFWNTR TGACLNSLDT ASQVSSLLWS NNQRELLCSH GSQLTLWKYP SMVKMAELSG HTSRVLSMTQ SPDGCTVVSA AGDENLCFWN
401: VFGLPDTTAK KTVPKAAREP FSHVPRIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.