Factsheet for Zm00001d005562_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d014685_P009
Zm00001d017475_P002
Zm00001d018349_P001
Zm00001d021235_P001
Zm00001d024858_P004
Zm00001d028183_P002
Zm00001d028358_P003
Zm00001d035596_P001
Zm00001d038666_P002
Zm00001d040015_P001
Zm00001d042523_P001
Zm00001d045047_P002
Zm00001d047979_P005
Zm00001d052056_P005
Zm00001d052072_P003
Zm00001d052917_P001
Zm00001d053553_P002
Zm00001d053857_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	Zm00001d021235_P001	AT1G06590.1	20706207
AT4G33270.1	Zm00001d028358_P003	AT1G78770.1	20706207
AT4G33270.1	Zm00001d047979_P005	AT1G78770.1	20706207
AT4G33270.1	Zm00001d014685_P009	AT2G04660.1	20706207
AT4G33270.1	Zm00001d042523_P001	AT2G20000.1	17944809
AT4G33270.1	Zm00001d042523_P001	AT2G20000.1	20706207
AT4G33270.1	Zm00001d024858_P004	AT2G39090.1	20706207
AT4G33270.1	Zm00001d053857_P002	AT3G11830.1	20706207
AT4G33270.1	Zm00001d017475_P002	AT3G48150.1	20706207
AT4G33270.1	Zm00001d035596_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d038666_P002	AT4G21530.1	20706207
AT4G33270.1	Zm00001d040015_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d045047_P002	AT4G21530.1	20706207
AT4G33270.1	Zm00001d052072_P003	AT4G21530.1	20706207
AT4G33270.1	Zm00001d052917_P001	AT4G21530.1	20706207
AT4G33270.1	Zm00001d028183_P002	AT5G26360.1	20706207
AT4G33270.1	Zm00001d053553_P002	AT5G26360.1	20706207
AT5G26900.1	Zm00001d042523_P001	AT2G20000.1	17944809
AT5G27080.1	Zm00001d053857_P002	AT3G11830.1	20706207
AT5G27080.1	Zm00001d018349_P001	AT3G20050.1	20706207
AT5G27080.1	Zm00001d052056_P005	AT3G20050.1	20706207
AT5G27080.1	Zm00001d028183_P002	AT5G26360.1	20706207
AT5G27080.1	Zm00001d053553_P002	AT5G26360.1	20706207
AT5G27570.1	Zm00001d042523_P001	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08491	Soybean	cytosol	34.3	50.71
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	35.27	50.0
TraesCS2D01G118700.1	Wheat	cytosol	33.82	33.33
VIT_16s0039g02620.t01	Wine grape	cytosol	37.2	33.19
Zm00001d016034_P002	Maize	nucleus	55.56	24.42
Zm00001d000168_P001	Maize	plastid	56.04	24.32
Bra037011.1-P	Field mustard	nucleus	43.0	21.24
PGSC0003DMT400069533	Potato	nucleus, plastid	45.89	20.88
Solyc06g072830.2.1	Tomato	nucleus, plastid	45.41	20.66
VIT_15s0107g00320.t01	Wine grape	nucleus	44.44	20.44
Solyc03g096870.2.1	Tomato	nucleus	43.48	19.87
PGSC0003DMT400001467	Potato	nucleus	43.48	19.87
AT4G33260.1	Thale cress	nucleus	42.03	19.46
Zm00001d017725_P001	Maize	mitochondrion	28.99	19.17
AT4G33270.1	Thale cress	nucleus	42.03	19.04
Zm00001d006622_P001	Maize	golgi	30.92	18.93
Bra034555.1-P	Field mustard	nucleus	34.3	18.73
Solyc08g005420.2.1	Tomato	nucleus	40.1	18.53
Bra005544.1-P	Field mustard	nucleus	39.13	18.45
VIT_16s0039g02510.t01	Wine grape	nucleus	40.1	18.4
AT5G27080.1	Thale cress	nucleus	39.13	18.33
PGSC0003DMT400047585	Potato	nucleus	39.61	18.3
AT5G26900.1	Thale cress	nucleus	39.13	18.24
AT5G27570.1	Thale cress	nucleus	39.61	18.22
VIT_05s0102g00550.t01	Wine grape	nucleus	34.78	17.43
VIT_05s0102g00640.t01	Wine grape	nucleus	34.78	17.43
Bra008327.1-P	Field mustard	cytosol, mitochondrion	35.75	17.29
VIT_05s0029g01120.t01	Wine grape	nucleus	34.3	17.19
CDX98239	Canola	nucleus	11.11	17.16
VIT_05s0102g00680.t01	Wine grape	nucleus	33.82	16.87
Bra011430.1-P	Field mustard	cytosol	43.48	12.59
Zm00001d041957_P004	Maize	plastid	28.99	12.37
Zm00001d048472_P001	Maize	nucleus, plastid	27.05	10.77
Zm00001d027430_P001	Maize	plastid	26.09	10.51
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	16.91	8.18
Zm00001d015555_P001	Maize	cytosol	1.93	5.26
GSMUA_Achr2P19120_001	Banana	cytosol	5.31	4.12

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	UniProt:A0A1D6ENT8	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997
GO:GO:0019538	GO:GO:0030234	GO:GO:0051301	GO:GO:0097027	GO:GO:1904668	InterPro:IPR015943
ProteinID:ONM21452.1	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	UniParc:UPI000221E506	InterPro:WD40/YVTN_repeat-like_dom_sf	EnsemblPlantsGene:Zm00001d005562
EnsemblPlants:Zm00001d005562_P001	EnsemblPlants:Zm00001d005562_T001	:	:	:	:

Description

Cell division cycle 20.1 cofactor of APC complex

Coordinates

chr2:-:178526040..178526833

Molecular Weight (calculated)

22970.4 Da

IEP (calculated)

9.078

GRAVY (calculated)

-0.418

Length

207 amino acids

Sequence
(BLAST)

001: MPSLSSGSRN PSAKCYVSPF SCYLGKQGGR SMVCLTKFAL FSTSPPVYVL HGDRFIPGRS AMDMDMAHYL LTEPRKDKEN TAGMVASPSK EAYRRLLTGK
101: LFNNRTRILD FRNKLPEPEN MSSTNVASSN LQVEPTKQRR HIPESAERTL NAPELVDDYY LNLLDWGSNN VLSISLGNIV YLRDALRGST SKLVTIDEDS
201: GPITSVS

Best Arabidopsis Sequence Match ( AT4G33260.1 )
(BLAST)

001: MDAGLNRCPL QEHFLPRKNS KENLDRFIPN RSAMNFDYAH FALTEERKGK DQSATVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV ELLPSNHSAS
101: LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG LNNSEVQLWD
201: SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS NSTTQWLHRL
301: EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG HTSRVLYMAQ
401: SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVAEPF SHVNRIR

Arabidopsis Description

CDC20-2Cell division cycle 20.2, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7I8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.