Factsheet for Zm00001d024858_P004

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017475_P002
Zm00001d021235_P001
Zm00001d028358_P003
Zm00001d030048_P001
Zm00001d030079_P001
Zm00001d035596_P001
Zm00001d038666_P002
Zm00001d040015_P001
Zm00001d042523_P001
Zm00001d045047_P002
Zm00001d047032_P001
Zm00001d047033_P001
Zm00001d047979_P005
Zm00001d052072_P003
Zm00001d052917_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39090.1	Zm00001d021235_P001	AT1G06590.1	20706207
AT2G39090.1	Zm00001d030079_P001	AT1G32310.1	20706207
AT2G39090.1	Zm00001d028358_P003	AT1G78770.1	20706207
AT2G39090.1	Zm00001d047979_P005	AT1G78770.1	20706207
AT2G39090.1	Zm00001d042523_P001	AT3G16320.1	20706207
AT2G39090.1	Zm00001d017475_P002	AT3G48150.1	20706207
AT2G39090.1	Zm00001d035596_P001	AT4G21530.1	20706207
AT2G39090.1	Zm00001d038666_P002	AT4G21530.1	20706207
AT2G39090.1	Zm00001d040015_P001	AT4G21530.1	20706207
AT2G39090.1	Zm00001d045047_P002	AT4G21530.1	20706207
AT2G39090.1	Zm00001d052072_P003	AT4G21530.1	20706207
AT2G39090.1	Zm00001d052917_P001	AT4G21530.1	20706207
AT2G39090.1	Zm00001d030048_P001	AT4G27600.1	21798944
AT2G39090.1	Zm00001d047032_P001	AT4G27600.1	21798944
AT2G39090.1	Zm00001d047033_P001	AT4G27600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG21309	Sorghum	cytosol	94.45	91.51
Os05t0149900-01	Rice	cytosol	88.73	88.41
TraesCS1D01G098700.1	Wheat	cytosol	87.48	87.17
TraesCS1A01G090300.1	Wheat	cytosol	87.48	87.17
TraesCS1B01G118300.2	Wheat	cytosol	86.94	86.63
HORVU1Hr1G021230.8	Barley	cytosol	85.69	86.31
GSMUA_Achr5P26960_001	Banana	cytosol	71.38	71.12
VIT_05s0020g01730.t01	Wine grape	cytosol	67.26	67.14
KRH11210	Soybean	cytosol	66.01	65.89
KRH21040	Soybean	nucleus	65.83	65.71
Solyc01g067490.2.1	Tomato	cytosol	64.94	64.71
CDY44628	Canola	cytosol	60.29	60.39
CDX74867	Canola	cytosol	60.29	60.39
Bra005063.1-P	Field mustard	cytosol	60.11	60.22
AT2G39090.1	Thale cress	cytosol	59.93	60.04
CDY53538	Canola	mitochondrion	14.67	53.59
CDY06464	Canola	cytosol	12.7	50.0

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103641394	MapMan:13.3.4.1.1.2.3	ProteinID:AQK42219.1	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	UniProt:K7TIT0	PFAM:PF13181
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF8	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI0001B636B3	EnsemblPlantsGene:Zm00001d024858	EnsemblPlants:Zm00001d024858_P004
EnsemblPlants:Zm00001d024858_T004	SEG:seg	:	:	:	:

Description

Anaphase-promoting complex subunit 7

Coordinates

chr10:+:90998301..91013374

Molecular Weight (calculated)

62773.3 Da

IEP (calculated)

6.828

GRAVY (calculated)

-0.343

Length

559 amino acids

Sequence
(BLAST)

001: MDAARESMAA LLDAGLFGPA QTLGCFLVSS AGAGNDAGMS MKVESLVQHG DALYGEKEFR RALNAYKQAM QYSRSIPRQA TSNTRSSVSV TGRSPSPNSS
101: NLLSFNENEV KFKIALCHSA LCEHREALHE MEGIPSKVRT LKMNMMLGKL YRISRNSRTA VVCYKECLRQ CPYVFEAITA LAEMGLSAKE FSLLFSQAPN
201: RGGKLSGDFV DTQRWWSRYV EAQCCIASHD YKGGLDIYLE LMQRFPNNVH ILLEIAKVEA IIGRNDEAIM NFEKVRLIDP NIMTYMDEYA ILLKSKSDYI
301: RLNKLVHDML HIDPARPETC VALAAMWERK DERKALTYAE KSLRVDDRHI TGYIMKGNLH LSLNRPDLAV TDFRGAQELR ADLRSYQGLV RAYLALSKCK
401: DALFTAREAM KVMHQSAKAL KLVGDVHAIS SSGREKARKF YESAIRLEPG FLGAALALAD LHVAEGRNKE AVMLLERYIQ QWSDDSLHIK VAQVHAATNM
501: LSDALSHYQS ALRINPQNEA AKNGLERLEK QMKGVDPDAP EDDEENEEED VDVDRDDFI

Best Arabidopsis Sequence Match ( AT2G39090.1 )
(BLAST)

001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM

Arabidopsis Description

APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.