CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79070
CDX79885
CDX82833
CDX87437
CDX88475
CDX89233
CDX97740
CDY06219
CDY06653
CDY09966
CDY10211
CDY10563
CDY29847
CDY30158
CDY32305
CDY36901
CDY44976
CDY53501
CDY56323
CDY58069
CDY58070
CDY61823
CDY70805

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39090.1	CDY06219	AT1G06590.1	20706207
AT2G39090.1	CDY06653	AT1G06590.1	20706207
AT2G39090.1	CDY09966	AT1G06590.1	20706207
AT2G39090.1	CDY10211	AT1G06590.1	20706207
AT2G39090.1	CDY32305	AT1G32310.1	20706207
AT2G39090.1	CDY61823	AT1G32310.1	20706207
AT2G39090.1	CDX87437	AT1G78770.1	20706207
AT2G39090.1	CDX88475	AT1G78770.1	20706207
AT2G39090.1	CDY10563	AT1G78770.1	20706207
AT2G39090.1	CDX79885	AT2G42260.1	20706207
AT2G39090.1	CDY53501	AT2G42260.1	20706207
AT2G39090.1	CDX97740	AT3G16320.1	20706207
AT2G39090.1	CDY30158	AT3G16320.1	20706207
AT2G39090.1	CDY36901	AT3G48150.1	20706207
AT2G39090.1	CDY44976	AT3G48150.1	20706207
AT2G39090.1	CDY58069	AT3G48150.1	20706207
AT2G39090.1	CDY58070	AT3G48150.1	20706207
AT2G39090.1	CDY70805	AT3G48150.1	20706207
AT2G39090.1	CDX79070	AT4G21530.1	20706207
AT2G39090.1	CDX82833	AT4G21530.1	20706207
AT2G39090.1	CDX89233	AT4G27600.1	21798944
AT2G39090.1	CDY29847	AT4G27600.1	21798944
AT2G39090.1	CDY56323	AT4G27600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005063.1-P	Field mustard	cytosol	99.28	99.28
CDX74867	Canola	cytosol	99.28	99.28
AT2G39090.1	Thale cress	cytosol	93.19	93.19
VIT_05s0020g01730.t01	Wine grape	cytosol	74.91	74.64
CDY53538	Canola	mitochondrion	20.43	74.51
KRH11210	Soybean	cytosol	73.66	73.39
KRH21040	Soybean	nucleus	73.3	73.04
Solyc01g067490.2.1	Tomato	cytosol	71.33	70.94
GSMUA_Achr5P26960_001	Banana	cytosol	69.0	68.63
CDY06464	Canola	cytosol	17.03	66.9
Os05t0149900-01	Rice	cytosol	62.01	61.68
HORVU1Hr1G021230.8	Barley	cytosol	61.11	61.44
TraesCS1A01G090300.1	Wheat	cytosol	61.29	60.96
TraesCS1B01G118300.2	Wheat	cytosol	61.29	60.96
TraesCS1D01G098700.1	Wheat	cytosol	61.29	60.96
Zm00001d024858_P004	Maize	cytosol	60.39	60.29
KXG21309	Sorghum	cytosol	60.04	58.06

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.3	UniProt:A0A078I693	EnsemblPlants:CDY44628	ProteinID:CDY44628	ProteinID:CDY44628.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00080580001	InterPro:IPR011990	InterPro:IPR013026
InterPro:IPR019734	PFAM:PF13176	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558
PANTHER:PTHR12558:SF8	SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0004EE4C7D	SEG:seg	:	:	:	:

Description

BnaC04g06340DBnaC04g06340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I693]

Coordinates

chrLK032597:-:84816..88745

Molecular Weight (calculated)

62216.4 Da

IEP (calculated)

6.899

GRAVY (calculated)

-0.273

Length

558 amino acids

Sequence
(BLAST)

001: MDVPKDQIAT LMEHGLYDSA EMLGCFLVSS STVSAEASPH LKAETLILLG DALFHRREYR RAIHTYKQAL HHCARVPKQS SGISRSSLSL STRSSVNASS
101: VSSINENEVR FKIASSHFAL SETKAAIAEM ESVKTRSLEM NVLMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAIIGLAE LGATAKDIIS AFTQTSSRST
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TCMDEYAMLL QMKCDYSRLN
301: KLVHDLLSID HTRAEVFVAL SVLWERKDPR TALSYAEKSI RVDERHIPGY IVKGNFLLLA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHANTSSG REKAKKFYES ALRLEPGYLG AAIALADLHL MEGRNGDAVS LLERYLKDWA DESLHVKLAQ VFAATNMLQD
501: SLSHYQAALR INPQNEAAKK GLDRLEKQMK GIDPDAADEN DENDVEDVDG DTEEAELM

Best Arabidopsis Sequence Match ( AT2G39090.1 )
(BLAST)

001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM

Arabidopsis Description

APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.