CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG95339
KRH14509
KRH24006
KRH24012
KRH26168
KRH27971
KRH29306
KRH29310
KRH39569
KRH49954
KRH55075
KRH67023
KRH73622
KRH74384
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39090.1	KRH14509	AT1G06590.1	20706207
AT2G39090.1	KRH73622	AT1G06590.1	20706207
AT2G39090.1	KRH39569	AT1G32310.1	20706207
AT2G39090.1	KRH74384	AT1G32310.1	20706207
AT2G39090.1	KRH26168	AT1G78770.1	20706207
AT2G39090.1	KRH55075	AT1G78770.1	20706207
AT2G39090.1	KRG95339	AT2G42260.1	20706207
AT2G39090.1	KRH67023	AT2G42260.1	20706207
AT2G39090.1	KRH24006	AT3G48150.1	20706207
AT2G39090.1	KRH27971	AT3G48150.1	20706207
AT2G39090.1	KRH29310	AT3G48150.1	20706207
AT2G39090.1	KRH77487	AT3G48150.1	20706207
AT2G39090.1	KRH49954	AT4G21530.1	20706207
AT2G39090.1	KRH24012	AT4G27600.1	21798944
AT2G39090.1	KRH29306	AT4G27600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11210	Soybean	cytosol	98.04	98.04
VIT_05s0020g01730.t01	Wine grape	cytosol	83.21	83.21
Solyc01g067490.2.1	Tomato	cytosol	79.46	79.32
GSMUA_Achr5P26960_001	Banana	cytosol	75.71	75.58
AT2G39090.1	Thale cress	cytosol	73.21	73.48
Bra005063.1-P	Field mustard	cytosol	73.04	73.3
CDY44628	Canola	cytosol	73.04	73.3
CDX74867	Canola	cytosol	72.86	73.12
Os05t0149900-01	Rice	cytosol	68.21	68.09
TraesCS1D01G098700.1	Wheat	cytosol	67.86	67.74
TraesCS1A01G090300.1	Wheat	cytosol	67.5	67.38
HORVU1Hr1G021230.8	Barley	cytosol	66.43	67.03
TraesCS1B01G118300.2	Wheat	cytosol	67.14	67.02
Zm00001d024858_P004	Maize	cytosol	65.71	65.83
KXG21309	Sorghum	cytosol	66.79	64.82
CDY53538	Canola	mitochondrion	16.96	62.09
CDY06464	Canola	cytosol	14.64	57.75

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100785127	MapMan:13.3.4.1.1.2.3	EMBL:ACUP02008334	EnsemblPlantsGene:GLYMA_13G216500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	UniProt:I1M1D5	InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734
EnsemblPlants:KRH21040	ProteinID:KRH21040	ProteinID:KRH21040.1	PFAM:PF13176	PFAM:PF13181	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF8	SMART:SM00028	SUPFAM:SSF48452
InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI000233C088	SEG:seg	:

Description

hypothetical protein

Coordinates

chr13:-:32966286..32973567

Molecular Weight (calculated)

62920.5 Da

IEP (calculated)

6.794

GRAVY (calculated)

-0.352

Length

560 amino acids

Sequence
(BLAST)

001: MEVPKDQIAT LLEHGLYNSA QMLGCFLVSS PAVNAESAPH LKTESLVLLG DSFFREREYR RAIHTYKQAL QCYKMIPKQN MTSSRSSLSS NRSSSPNSCN
101: GSVINENEVK FKIASCHSFL NENKAALVEM EGIPSKARNL PMNLLLGRLY RISRHSRAAV AIYKECLRHC PYVLEAITAL AELGSTAKDI ISLIPQTLNR
201: SGRAPFDHTD SSRWLQRYVE AQCCMASNDY KGGLELFADL LQRFPNNIHI ILEMAKVEAI IGKNEEAIMN FEKARSIDPY IVTYMDEYAM LLKLKSDYPK
301: LNKLVHDLLN IDPARPEVFV ALSVLWERKD EKKALQYAEQ SVRIDERHIP GYIMKGNLLL TMKRAEAAVP AFRAAQELRP DIRSYQGLVH TYLALSKIKE
401: ALYASREAMK AMPQSAKALK LVGDVHASNS SGREKAKKFY ESALRLEPGY LGAALALAEL HVIEGRNGDA VSLLERYLKD WADDSLHVKL AQVFAATNML
501: QEALSHYQAA LRLNPQNEAA KRGLERLEKQ MKGVDPDAPE EDEDNDVEDA DGDQDETELL

Best Arabidopsis Sequence Match ( AT2G39090.1 )
(BLAST)

001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM

Arabidopsis Description

APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.