Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005063.1-P | Field mustard | cytosol | 99.64 | 99.64 |
| CDY44628 | Canola | cytosol | 99.28 | 99.28 |
| AT2G39090.1 | Thale cress | cytosol | 93.55 | 93.55 |
| VIT_05s0020g01730.t01 | Wine grape | cytosol | 74.91 | 74.64 |
| CDY53538 | Canola | mitochondrion | 20.43 | 74.51 |
| KRH11210 | Soybean | cytosol | 73.48 | 73.21 |
| KRH21040 | Soybean | nucleus | 73.12 | 72.86 |
| Solyc01g067490.2.1 | Tomato | cytosol | 71.15 | 70.77 |
| GSMUA_Achr5P26960_001 | Banana | cytosol | 69.0 | 68.63 |
| CDY06464 | Canola | cytosol | 17.03 | 66.9 |
| Os05t0149900-01 | Rice | cytosol | 62.19 | 61.85 |
| HORVU1Hr1G021230.8 | Barley | cytosol | 61.29 | 61.62 |
| TraesCS1A01G090300.1 | Wheat | cytosol | 61.47 | 61.14 |
| TraesCS1B01G118300.2 | Wheat | cytosol | 61.47 | 61.14 |
| TraesCS1D01G098700.1 | Wheat | cytosol | 61.47 | 61.14 |
| Zm00001d024858_P004 | Maize | cytosol | 60.39 | 60.29 |
| KXG21309 | Sorghum | cytosol | 60.04 | 58.06 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:13.3.4.1.1.2.3 | EnsemblPlants:CDX74867 | ProteinID:CDX74867 | ProteinID:CDX74867.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00116857001 | InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 |
| PFAM:PF13176 | PFAM:PF14559 | PFscan:PS50005 | PFscan:PS50293 | PANTHER:PTHR12558 | PANTHER:PTHR12558:SF8 |
| SMART:SM00028 | SUPFAM:SSF48452 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat | UniParc:UPI0004EE9914 |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g06130D
Coordinates
chrLK031802:+:1118017..1122106
Molecular Weight (calculated)
62158.3 Da
IEP (calculated)
6.795
GRAVY (calculated)
-0.270
Length
558 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVPKDQIAT LMEHGLYDSA EMLGCFLVSS STASAEASPH LKAETLILLG DALFHQREYR RAIHTYKQAL HHCARVPKQS SGISRSSLSL STRSSVNASS
101: VSAINENEVR FKIASSHFAL SETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAIIGLAE LGATAKDIIS AFTQTSSRST
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TCMDEYAMLL QMKCDYSRLN
301: KLVHDLLSID HTRAEVFVAL SVLWERKDPR TALSYAEKSI RVDERHIPGY IVKGNFLLLA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHANTSSG REKAKKFYES ALRLEPGYLG AAIALADLHL MEGRNGDAVS LLERYLKDWA DESLHVKLAQ VFAATNMLQD
501: SLSHYQAALR INPQNEAAKK GLDRLEKQMK GIDPDAADEN DENDVEDVDG DTEEAELM
101: VSAINENEVR FKIASSHFAL SETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAIIGLAE LGATAKDIIS AFTQTSSRST
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TCMDEYAMLL QMKCDYSRLN
301: KLVHDLLSID HTRAEVFVAL SVLWERKDPR TALSYAEKSI RVDERHIPGY IVKGNFLLLA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHANTSSG REKAKKFYES ALRLEPGYLG AAIALADLHL MEGRNGDAVS LLERYLKDWA DESLHVKLAQ VFAATNMLQD
501: SLSHYQAALR INPQNEAAKK GLDRLEKQMK GIDPDAADEN DENDVEDVDG DTEEAELM
001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM
Arabidopsis Description
APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.