Factsheet for VIT_05s0020g01730.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0181g00190.t01
VIT_00s0181g00210.t01
VIT_02s0012g02000.t01
VIT_05s0124g00450.t01
VIT_07s0031g02330.t01
VIT_07s0130g00490.t01
VIT_08s0007g07790.t01
VIT_12s0028g00720.t01
VIT_12s0028g00740.t01
VIT_16s0039g01580.t01
VIT_19s0014g01170.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39090.1	VIT_02s0012g02000.t01	AT1G06590.1	20706207
AT2G39090.1	VIT_12s0028g00720.t01	AT1G06590.1	20706207
AT2G39090.1	VIT_12s0028g00740.t01	AT1G06590.1	20706207
AT2G39090.1	VIT_05s0124g00450.t01	AT1G32310.1	20706207
AT2G39090.1	VIT_19s0014g01170.t01	AT1G78770.1	20706207
AT2G39090.1	VIT_08s0007g07790.t01	AT2G42260.1	20706207
AT2G39090.1	VIT_07s0031g02330.t01	AT3G48150.1	20706207
AT2G39090.1	VIT_07s0130g00490.t01	AT3G48150.1	20706207
AT2G39090.1	VIT_00s0181g00190.t01	AT4G21530.1	20706207
AT2G39090.1	VIT_00s0181g00210.t01	AT4G21530.1	20706207
AT2G39090.1	VIT_16s0039g01580.t01	AT4G27600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11210	Soybean	cytosol	83.39	83.39
KRH21040	Soybean	nucleus	83.21	83.21
Solyc01g067490.2.1	Tomato	cytosol	82.14	82.0
GSMUA_Achr5P26960_001	Banana	cytosol	77.86	77.72
AT2G39090.1	Thale cress	cytosol	75.18	75.45
Bra005063.1-P	Field mustard	cytosol	74.82	75.09
CDY44628	Canola	cytosol	74.64	74.91
CDX74867	Canola	cytosol	74.64	74.91
TraesCS1D01G098700.1	Wheat	cytosol	70.54	70.41
TraesCS1A01G090300.1	Wheat	cytosol	70.18	70.05
HORVU1Hr1G021230.8	Barley	cytosol	69.29	69.91
Os05t0149900-01	Rice	cytosol	69.64	69.52
TraesCS1B01G118300.2	Wheat	cytosol	69.64	69.52
Zm00001d024858_P004	Maize	cytosol	67.14	67.26
KXG21309	Sorghum	cytosol	67.68	65.68
CDY53538	Canola	mitochondrion	16.25	59.48
CDY06464	Canola	cytosol	14.11	55.63

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100242558	wikigene:100242558	MapMan:13.3.4.1.1.2.3	EMBL:AM423802	ProteinID:CAN77821
ProteinID:CAN77821.1	ProteinID:CBI26098	ProteinID:CBI26098.3	ncoils:Coil	UniProt:D7T6H7	EMBL:FN595749
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EntrezGene:LOC100242558	wikigene:LOC100242558	PFAM:PF13176
PFAM:PF13181	PFAM:PF14559	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF8
SMART:SM00028	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	UniParc:UPI00015C7BCB
ArrayExpress:VIT_05s0020g01730	EnsemblPlantsGene:VIT_05s0020g01730	EnsemblPlants:VIT_05s0020g01730.t01	RefSeq:XP_002275310	RefSeq:XP_002275310.1	SEG:seg

Description

No Description!

Coordinates

chr5:+:3447671..3456769

Molecular Weight (calculated)

62904.5 Da

IEP (calculated)

6.698

GRAVY (calculated)

-0.327

Length

560 amino acids

Sequence
(BLAST)

001: MDVPRDQVTT LMEHGLYTSA QMLGCFLVSS SAVNPETSPH IKAESLVLLG DALFREREHR RAIHTYKQAL QHYKIIPRQN STTRISLSTS NRSSSPNSFN
101: ISAINENEVK FKIASCHCAI NENVAALAEM EGIPSKARNL QMNLLMGKLH RNSRQNRAAI ACYKECLRHC PYVIEAIIAL AELGVTAKDI LSLFPQTPNR
201: SGRPPFDHFD SSRWLQRYVE AQCCIASNDY KGGLELFTEL LQRFPNNIHI LLEIAKVEAI IGKNDEAIMN FEKARSIDPH IITYMDEYAM LLMIKSDHLK
301: LNKLVHDLLS IDPTRPEVFV ALSVVWERKE ERGALSYAEK SIRIDERHIP GYIMKGNLYL SMNRPDAAVV AFRGAQELKP DLRSYQGLVR SYLALSKIKE
401: ALYVAREAMK AMPQSAKALK LVGDVHASNS GGREKAKKFY ESALRLEPGY LGAALALAEL HVMEGRTGDA ISLLERYLKD WADDSLHVKL AQVFAATNML
501: QDALSHYQSA LRINAQNEAA KKGLERLEKQ MKGVDPDAPE EDEENEVEDA DGDQEEAELL

Best Arabidopsis Sequence Match ( AT2G39090.1 )
(BLAST)

001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM

Arabidopsis Description

APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.