Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G090300.1 | Wheat | cytosol | 99.47 | 99.47 |
| TraesCS1B01G118300.2 | Wheat | cytosol | 98.57 | 98.57 |
| HORVU1Hr1G021230.8 | Barley | cytosol | 95.54 | 96.58 |
| Os05t0149900-01 | Rice | cytosol | 90.02 | 90.02 |
| Zm00001d024858_P004 | Maize | cytosol | 87.17 | 87.48 |
| KXG21309 | Sorghum | cytosol | 87.52 | 85.1 |
| GSMUA_Achr5P26960_001 | Banana | cytosol | 73.97 | 73.97 |
| VIT_05s0020g01730.t01 | Wine grape | cytosol | 70.41 | 70.54 |
| KRH21040 | Soybean | nucleus | 67.74 | 67.86 |
| KRH11210 | Soybean | cytosol | 67.56 | 67.68 |
| Solyc01g067490.2.1 | Tomato | cytosol | 66.13 | 66.13 |
| CDX74867 | Canola | cytosol | 61.14 | 61.47 |
| CDY44628 | Canola | cytosol | 60.96 | 61.29 |
| Bra005063.1-P | Field mustard | cytosol | 60.96 | 61.29 |
| AT2G39090.1 | Thale cress | cytosol | 60.61 | 60.93 |
| CDY53538 | Canola | mitochondrion | 14.79 | 54.25 |
| CDY06464 | Canola | cytosol | 12.83 | 50.7 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G098700.1 | EnsemblPlantsGene:TraesCS1D01G098700 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR011990 | InterPro:IPR013026 | InterPro:IPR019734 | InterPro:TPR-contain_dom | InterPro:TPR-like_helical_dom_sf | InterPro:TPR_repeat |
| PANTHER:PTHR12558 | PANTHER:PTHR12558:SF8 | PFAM:PF13181 | PFAM:PF14559 | PFscan:PS50005 | PFscan:PS50293 |
| SEG:seg | SMART:SM00028 | SUPFAM:SSF48452 | MapMan:13.3.4.1.1.2.3 | : | : |
Description
No Description!
Coordinates
chr1D:+:85926067..85937386
Molecular Weight (calculated)
62772.3 Da
IEP (calculated)
6.790
GRAVY (calculated)
-0.339
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAARDSMAA LLDAGIFDSA QTLGCFLVSS GGANNEASIS MKAESLVLHG DALYGEKEFR RALNAYKQAM QCSKSIPRQA TSTARISIST TGRSPSPNSS
101: NVMPFNENEV KSKIAICHSA LHEYREALQE MEGIPSKMRN LKMNLMLGKL YRISRNNRAA AICYKECLRQ CPYVFEAIAA LAEMGLSSKE FSLLFAQAPN
201: RGGKPPGDFL DAQRWWNRYV EAQCCIASHD YKGGLDIYLE LMQRFPNNVH ILLEIAKVET IIGKNEEAIM NFEKARLIDP NIMTYMDEYA ILLKLKSDYT
301: KLNKLVHDML HIDPARPETC IALAAFWERK DERKALTYAE KSLRVDDRHI TGYIMKGNLH LSLNRPDLAV TDFRGAQELR ADLRSYQGLV RAYLALSKCK
401: DALFTAREAM KVMHQSAKAL KLVGDVHAIS SSGREKARKF YESAIRLEPG FLGAALALAD LHVAEGRNKE AVLLLERYLR QWADDSLHIK LAQVFAATSL
501: LSDALSHYQS ALRINPHNEA AKKGLERLEK QMKGVDPDAP EDEDENEADD VDGDQDDAEL L
101: NVMPFNENEV KSKIAICHSA LHEYREALQE MEGIPSKMRN LKMNLMLGKL YRISRNNRAA AICYKECLRQ CPYVFEAIAA LAEMGLSSKE FSLLFAQAPN
201: RGGKPPGDFL DAQRWWNRYV EAQCCIASHD YKGGLDIYLE LMQRFPNNVH ILLEIAKVET IIGKNEEAIM NFEKARLIDP NIMTYMDEYA ILLKLKSDYT
301: KLNKLVHDML HIDPARPETC IALAAFWERK DERKALTYAE KSLRVDDRHI TGYIMKGNLH LSLNRPDLAV TDFRGAQELR ADLRSYQGLV RAYLALSKCK
401: DALFTAREAM KVMHQSAKAL KLVGDVHAIS SSGREKARKF YESAIRLEPG FLGAALALAD LHVAEGRNKE AVLLLERYLR QWADDSLHIK LAQVFAATSL
501: LSDALSHYQS ALRINPHNEA AKKGLERLEK QMKGVDPDAP EDEDENEADD VDGDQDDAEL L
001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM
Arabidopsis Description
APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.