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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra005063.1-P Field mustard cytosol 93.91 93.91
CDX74867 Canola cytosol 93.55 93.55
CDY44628 Canola cytosol 93.19 93.19
VIT_05s0020g01730.t01 Wine grape cytosol 75.45 75.18
KRH11210 Soybean cytosol 73.84 73.57
KRH21040 Soybean nucleus 73.48 73.21
Solyc01g067490.2.1 Tomato cytosol 71.33 70.94
CDY53538 Canola mitochondrion 18.82 68.63
GSMUA_Achr5P26960_001 Banana cytosol 68.64 68.27
CDY06464 Canola cytosol 16.13 63.38
Os05t0149900-01 Rice cytosol 61.83 61.5
HORVU1Hr1G021230.8 Barley cytosol 60.57 60.9
TraesCS1A01G090300.1 Wheat cytosol 60.93 60.61
TraesCS1B01G118300.2 Wheat cytosol 60.93 60.61
TraesCS1D01G098700.1 Wheat cytosol 60.93 60.61
Zm00001d024858_P004 Maize cytosol 60.04 59.93
KXG21309 Sorghum cytosol 60.04 58.06
Protein Annotations
Gene3D:1.25.40.10MapMan:13.3.4.1.1.2.3EntrezGene:818495UniProt:A0A178VSZ9ProteinID:AAC79619.1ProteinID:AEC09633.1
ProteinID:AEC09634.1EMBL:AK318773Symbol:APC7ArrayExpress:AT2G39090EnsemblPlantsGene:AT2G39090RefSeq:AT2G39090
TAIR:AT2G39090RefSeq:AT2G39090-TAIR-GEnsemblPlants:AT2G39090.1TAIR:AT2G39090.1EMBL:AY072346EMBL:BT002547
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005634GO:GO:0006464GO:GO:0007049GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0016567GO:GO:0019538GO:GO:0051301InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734
RefSeq:NP_001031513.1RefSeq:NP_850309.1ProteinID:OAP08914.1PFAM:PF14559PO:PO:0000013PO:PO:0000037
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281PFscan:PS50005PFscan:PS50293
PANTHER:PTHR12558PANTHER:PTHR12558:SF8UniProt:Q8VY89SMART:SM00028SUPFAM:SSF48452InterPro:TPR-contain_dom
InterPro:TPR-like_helical_dom_sfInterPro:TPR_repeatUniParc:UPI00000AC11CSEG:seg::
Description
APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
Coordinates
chr2:-:16312657..16317390
Molecular Weight (calculated)
62349.5 Da
IEP (calculated)
6.799
GRAVY (calculated)
-0.291
Length
558 amino acids
Sequence
(BLAST)
001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.