Factsheet for AT5G27080.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G26900.1	Thale cress	nucleus	94.34	93.92
AT5G27570.1	Thale cress	nucleus	90.27	88.67
AT4G33260.1	Thale cress	nucleus	78.05	77.18
AT4G33270.1	Thale cress	nucleus	78.28	75.71
CDY59111	Canola	nucleus	35.75	73.15
OQU82251	Sorghum	cytosol	27.6	69.71
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	64.93	67.06
Bra005544.1-P	Field mustard	nucleus	66.06	66.51
CDY52543	Canola	nucleus	64.03	66.12
CDY59110	Canola	nucleus	62.22	65.63
CDY59109	Canola	nucleus	62.22	65.63
KRH44738	Soybean	nucleus	65.61	65.61
KRH68047	Soybean	nucleus	67.19	64.99
CDY26774	Canola	mitochondrion	16.06	64.55
KRG94456	Soybean	cytosol	33.48	62.98
Os02t0700100-01	Rice	extracellular	66.29	62.47
KXG30937	Sorghum	nucleus	66.52	62.42
Bra008327.1-P	Field mustard	cytosol, mitochondrion	60.18	62.15
TraesCS5A01G272600.1	Wheat	plastid	65.61	62.1
TraesCS5D01G280600.1	Wheat	plastid	65.61	61.97
Solyc08g005420.2.1	Tomato	nucleus	62.67	61.83
TraesCS5B01G272800.1	Wheat	plastid	65.38	61.75
PGSC0003DMT400047585	Potato	nucleus	62.44	61.61
Zm00001d016034_P002	Maize	nucleus	65.61	61.57
EES06634	Sorghum	nucleus	66.06	61.47
TraesCS6B01G296200.1	Wheat	plastid	65.84	61.39
TraesCS6A01G268900.1	Wheat	plastid	65.84	61.39
TraesCS6D01G246000.1	Wheat	plastid	65.84	61.26
Zm00001d000168_P001	Maize	plastid	65.38	60.59
CDY71694	Canola	nucleus	23.53	60.12
TraesCS2B01G461400.1	Wheat	nucleus	65.38	59.1
TraesCS2D01G438800.1	Wheat	nucleus	64.71	58.73
TraesCS2A01G440000.2	Wheat	nucleus	64.71	58.37
Os04t0599800-01	Rice	nucleus	64.03	56.15
TraesCS6A01G085400.1	Wheat	nucleus	48.42	56.02
TraesCS5A01G197800.2	Wheat	mitochondrion, plastid	58.6	54.41
TraesCS5D01G193100.1	Wheat	mitochondrion, nucleus	58.6	54.41
TraesCS5B01G185900.1	Wheat	mitochondrion, nucleus	58.14	53.99
HORVU5Hr1G074370.15	Barley	endoplasmic reticulum, vacuole	57.92	53.89
Os09t0242300-00	Rice	plastid	57.24	52.93
KXG27036	Sorghum	cytosol	21.49	52.49
GSMUA_AchrUn_...	Banana	cytosol	10.18	51.72
GSMUA_Achr1P27660_001	Banana	mitochondrion	18.78	51.55
CDY44519	Canola	cytosol, nucleus	59.73	50.87
GSMUA_AchrUn_...	Banana	cytosol	26.92	49.79
HORVU6Hr1G068080.3	Barley	plastid	57.92	48.03
HORVU5Hr1G041780.3	Barley	plastid	58.6	47.87
GSMUA_Achr1P25940_001	Banana	cytosol	32.13	47.81
GSMUA_Achr1P27670_001	Banana	cytosol	6.79	47.62
GSMUA_Achr3P21370_001	Banana	cytosol	42.76	47.61
GSMUA_AchrUn_...	Banana	cytosol	38.69	46.98
GSMUA_AchrUn_...	Banana	nucleus	43.44	46.72
GSMUA_Achr1P28050_001	Banana	cytosol	42.53	46.19
KRH07005	Soybean	nucleus	12.67	45.16
GSMUA_AchrUn_...	Banana	cytosol	30.77	44.59
CDY28290	Canola	cytosol, mitochondrion, nucleus	14.71	44.52
Zm00001d017725_P001	Maize	mitochondrion	29.64	41.85
Zm00001d005562_P001	Maize	plastid	18.33	39.13
GSMUA_AchrUn_...	Banana	cytosol	24.43	37.76
AT5G13840.1	Thale cress	plastid	39.59	36.38
AT4G22910.1	Thale cress	nucleus, plastid	39.37	36.02
AT4G11920.1	Thale cress	nucleus	38.46	35.79
TraesCS2D01G118700.1	Wheat	cytosol	14.03	29.52
Zm00001d009154_P001	Maize	extracellular, plasma membrane, plastid	8.14	24.66
Zm00001d006622_P001	Maize	golgi	15.16	19.82
TraesCS2D01G438900.1	Wheat	mitochondrion	0.9	0.98
TraesCS2B01G461500.1	Wheat	mitochondrion	0.9	0.98

Protein Annotations

MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EntrezGene:832766	ProteinID:AAD48933.1	ProteinID:AAF14050.1	ProteinID:AED93647.2
ArrayExpress:AT5G27080	EnsemblPlantsGene:AT5G27080	RefSeq:AT5G27080	TAIR:AT5G27080	RefSeq:AT5G27080-TAIR-G	EnsemblPlants:AT5G27080.1
TAIR:AT5G27080.1	InterPro:Apc4_WD40_dom	Unigene:At.51416	InterPro:Cdc20/Fizzy	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0007049	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0016567
GO:GO:0019538	GO:GO:0030234	GO:GO:0051301	GO:GO:0097027	GO:GO:1904668	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	RefSeq:NP_198060.2	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	UniProt:Q9S7H3	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00000A7092	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	:	:	:	:	:

Description

CDC20-3Cell division cycle 20.3, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9S7H3]

Coordinates

chr5:-:9529753..9531081

Molecular Weight (calculated)

49155.0 Da

IEP (calculated)

8.763

GRAVY (calculated)

-0.426

Length

442 amino acids

Sequence
(BLAST)

001: MDSDTCTVPD HFLPRKLSKQ NLDRFIPNRS AMDFDFANYA LTQGRKRNVD EITSASRKAY MTQLAVVMNQ NRTRILAFRN KPKALLSSNH SDSPHQNPKS
101: VKPRRYIPQN SERVLDAPGL MDDFYLNLLD WGSANVLAIA LGDTVYLWDA SSGSTSELVT IDEDKGPVTS INWTQDGLDL AVGLDNSEVQ LWDFVSNRQV
201: RTLIGGHESR VGSLAWNNHI LTTGGMDGKI VNNDVRIRSS IVGTYLGHTE EVCGLKWSES GKKLASGGNY NVVHIWDHRS VASSKPTRQW LHRFEEHTAA
301: VRALAWCPFQ ATLLATGGGV GDGKIKFWNT HTGACLNSVE TGSQVCSLLW SQRERELLSS HGFTQNQLTL WKYPSMSKMA ELNGHTSRVL FMAQSPNGCT
401: VASAAGDENL RLWNVFGEPP KTTKKAASKN YLELFSHVNS LR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.