CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92501
KRG95339
KRG97883
KRH09301
KRH11210
KRH14509
KRH14704
KRH21040
KRH24006
KRH26168
KRH27971
KRH29310
KRH30104
KRH30995
KRH32716
KRH38791
KRH41728
KRH42973
KRH49954
KRH55075
KRH59103
KRH62794
KRH67023
KRH73433
KRH73622
KRH74904
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G33270.1	KRH14509	AT1G06590.1	20706207
AT4G33270.1	KRH73622	AT1G06590.1	20706207
AT4G33270.1	KRH26168	AT1G78770.1	20706207
AT4G33270.1	KRH55075	AT1G78770.1	20706207
AT4G33270.1	KRG97883	AT2G04660.1	20706207
AT4G33270.1	KRH30995	AT2G04660.1	20706207
AT4G33270.1	KRH32716	AT2G04660.1	20706207
AT4G33270.1	KRH74904	AT2G04660.1	20706207
AT4G33270.1	KRH41728	AT2G20000.1	17944809
AT4G33270.1	KRH41728	AT2G20000.1	20706207
AT4G33270.1	KRH11210	AT2G39090.1	20706207
AT4G33270.1	KRH21040	AT2G39090.1	20706207
AT4G33270.1	KRG95339	AT2G42260.1	20706207
AT4G33270.1	KRH67023	AT2G42260.1	20706207
AT4G33270.1	KRH14704	AT3G11830.1	20706207
AT4G33270.1	KRH73433	AT3G11830.1	20706207
AT4G33270.1	KRH24006	AT3G48150.1	20706207
AT4G33270.1	KRH27971	AT3G48150.1	20706207
AT4G33270.1	KRH29310	AT3G48150.1	20706207
AT4G33270.1	KRH77487	AT3G48150.1	20706207
AT4G33270.1	KRG95339	AT3G57860.1	20706207
AT4G33270.1	KRH67023	AT3G57860.1	20706207
AT4G33270.1	KRH49954	AT4G21530.1	20706207
AT4G33270.1	KRH30104	AT4G28230.1	20706207
AT4G33270.1	KRH62794	AT4G28230.1	20706207
AT4G33270.1	KRG92501	AT5G26360.1	20706207
AT4G33270.1	KRH09301	AT5G26360.1	20706207
AT4G33270.1	KRH38791	AT5G26360.1	20706207
AT5G26900.1	KRH41728	AT2G20000.1	17944809
AT5G27080.1	KRH14704	AT3G11830.1	20706207
AT5G27080.1	KRH73433	AT3G11830.1	20706207
AT5G27080.1	KRH42973	AT3G20050.1	20706207
AT5G27080.1	KRH59103	AT3G20050.1	20706207
AT5G27080.1	KRG92501	AT5G26360.1	20706207
AT5G27080.1	KRH09301	AT5G26360.1	20706207
AT5G27080.1	KRH38791	AT5G26360.1	20706207
AT5G27570.1	KRH41728	AT2G20000.1	17944809

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44738	Soybean	nucleus	85.34	88.24
KRG94456	Soybean	cytosol	41.36	80.43
CDY13491	Canola	cytosol	61.49	76.36
AT4G33260.1	Thale cress	nucleus	74.18	75.84
Bra037011.1-P	Field mustard	nucleus	68.93	75.18
KRH27762	Soybean	nucleus	74.62	74.95
AT4G33270.1	Thale cress	nucleus	74.84	74.84
KRH77717	Soybean	nucleus	74.4	74.73
CDY59111	Canola	nucleus	34.79	73.61
CDX68960	Canola	nucleus	64.55	71.43
Bra034555.1-P	Field mustard	nucleus	58.86	70.98
AT5G27570.1	Thale cress	nucleus	68.49	69.56
AT5G27080.1	Thale cress	nucleus	64.99	67.19
Bra005544.1-P	Field mustard	nucleus	64.11	66.74
Solyc08g005420.2.1	Tomato	nucleus	65.43	66.74
PGSC0003DMT400047585	Potato	nucleus	65.43	66.74
CDY26774	Canola	mitochondrion	15.97	66.36
AT5G26900.1	Thale cress	nucleus	64.33	66.22
CDY52543	Canola	nucleus	61.93	66.12
CDY59109	Canola	nucleus	60.61	66.11
CDY59110	Canola	nucleus	60.61	66.11
CDY71694	Canola	nucleus	23.41	61.85
GSMUA_AchrUn_...	Banana	cytosol	11.6	60.92
KRH07005	Soybean	nucleus	16.41	60.48
CDY28289	Canola	cytosol, extracellular, mitochondrion, plastid	25.38	60.1
Bra008327.1-P	Field mustard	cytosol, mitochondrion	56.24	60.05
GSMUA_Achr1P27660_001	Banana	mitochondrion	20.79	59.01
GSMUA_Achr1P27670_001	Banana	cytosol	8.1	58.73
AT5G27945.1	Thale cress	cytosol, plastid, vacuole	51.2	54.67
GSMUA_AchrUn_...	Banana	cytosol	28.23	53.97
GSMUA_Achr1P25940_001	Banana	cytosol	32.6	50.17
CDY44519	Canola	cytosol, nucleus	55.14	48.55
GSMUA_Achr3P21370_001	Banana	cytosol	42.01	48.36
GSMUA_AchrUn_...	Banana	nucleus	43.33	48.18
GSMUA_AchrUn_...	Banana	cytosol	38.29	48.08
Bra011430.1-P	Field mustard	cytosol	74.4	47.55
CDY28290	Canola	cytosol, mitochondrion, nucleus	15.1	47.26
GSMUA_Achr1P28050_001	Banana	cytosol	42.01	47.17
KRH08491	Soybean	cytosol	14.44	47.14
GSMUA_AchrUn_...	Banana	cytosol	30.42	45.57
CDY46124	Canola	cytosol	59.08	43.55
KRH70386	Soybean	cytosol	26.26	41.52
KRH77460	Soybean	nucleus, plastid	40.04	39.87
KRH33341	Soybean	nucleus	38.73	39.16
KRH57275	Soybean	nucleus	38.95	38.78
KRG97899	Soybean	plastid	39.17	36.61
KRH30985	Soybean	plastid	39.82	36.4
GSMUA_AchrUn_...	Banana	cytosol	22.1	35.31
KRH27985	Soybean	nucleus, plastid	34.57	34.8
KRH04001	Soybean	mitochondrion	38.95	33.84

Protein Annotations

EntrezGene:100801495	MapMan:13.3.4.1.4	Gene3D:2.130.10.10	EMBL:ACUP02002097	InterPro:Apc4_WD40_dom	InterPro:Cdc20/Fizzy
EnsemblPlantsGene:GLYMA_03G204700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027
GO:GO:1904668	UniProt:I1JQC1	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH68047
ProteinID:KRH68047	ProteinID:KRH68047.1	PFAM:PF00400	PFAM:PF12894	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19918	PANTHER:PTHR19918:SF30	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002339905
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

hypothetical protein

Coordinates

chr3:-:41278033..41280381

Molecular Weight (calculated)

50882.8 Da

IEP (calculated)

8.949

GRAVY (calculated)

-0.533

Length

457 amino acids

Sequence
(BLAST)

001: MDVGSWSSSP SKIKSRFSFQ DRLFRRKNSQ ENLDRFIPNR SAMDFDYAHY MLTEGNKKGK EKENPVVTSP SREAYQKQLA EAFNMNRTRI LAFKNKPRTP
101: VELIPSSILN PPPPPPNSSK PRRYIPQSSE KTLDAPDILD DYYLNLLDWG SGDVLSIALG NTVYLWNASD SSTAELVTVD EEDGPVTSVA WAPDGRHVAI
201: GLNNSHVQLW DSHASRLLRT LKGGHQARVG SLSWNNHILT TGGMDGRIVN NDVRVRHHIV ESYRGHQQEI CGLRWSPSGQ QLASGGNDNV IHIWDRTMVS
301: SNSPTHWLHR FEEHRAAVKA LAWCPFQANL LASGGGGGDH CIKFWNTHTG ACLNSVDTGS QVCALLWSKN ERELLSSHGF TQNQLALWKY PSMLKMAELK
401: GHTSRVLYMA QSPNGCTVAS AAGDETLRFW NVFGTAQASK PAPTASTDPF AHVNRIR

Best Arabidopsis Sequence Match ( AT4G33270.1 )
(BLAST)

001: MDAGMNNTSS HYKTQARCPL QEHFLPRKPS KENLDRFIPN RSAMNFDYAH FALTEGRKGK DQTAAVSSPS KEAYRKQLAE TMNLNHTRIL AFRNKPQAPV
101: ELLPSNHSAS LHQQPKSVKP RRYIPQTSER TLDAPDIVDD FYLNLLDWGS ANVLAIALDH TVYLWDASTG STSELVTIDE EKGPVTSINW APDGRHVAVG
201: LNNSEVQLWD SASNRQLRTL KGGHQSRVGS LAWNNHILTT GGMDGLIINN DVRIRSPIVE TYRGHTQEVC GLKWSGSGQQ LASGGNDNVV HIWDRSVASS
301: NSTTQWLHRL EEHTSAVKAL AWCPFQANLL ATGGGGGDRT IKFWNTHTGA CLNSVDTGSQ VCSLLWSKNE RELLSSHGFT QNQLTLWKYP SMVKMAELTG
401: HTSRVLYMAQ SPDGCTVASA AGDETLRFWN VFGVPETAKK AAPKAVSEPF SHVNRIR

Arabidopsis Description

CDC20-1Cell division cycle 20.1, cofactor of APC complex [Source:UniProtKB/Swiss-Prot;Acc:Q9SZA4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.