CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 3
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92501
KRG95339
KRG97883
KRH01617
KRH05109
KRH07006
KRH09301
KRH11210
KRH14509
KRH16010
KRH21040
KRH23040
KRH24006
KRH24828
KRH25124
KRH26168
KRH27566
KRH27971
KRH29310
KRH29829
KRH30550
KRH30995
KRH32716
KRH38791
KRH41685
KRH41728
KRH41742
KRH42973
KRH49954
KRH51329	endoplasmic reticulum
KRH52488
KRH52489
KRH55075
KRH59103
KRH60387
KRH60442
KRH60628	endoplasmic reticulum
KRH65519
KRH65565
KRH67023
KRH70494
KRH73622
KRH74904
KRH75241
KRH77487
KRH77964

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13840.1	KRH14509	AT1G06590.1	20706207
AT5G13840.1	KRH73622	AT1G06590.1	20706207
AT5G13840.1	KRH41742	AT1G14810.1	20706207
AT5G13840.1	KRH60442	AT1G14810.1	20706207
AT5G13840.1	KRH51329	AT1G20610.1	20407024
AT5G13840.1	KRH60628	AT1G20610.1	20407024
AT5G13840.1	KRH41685	AT1G23190.1	20706207
AT5G13840.1	KRH60387	AT1G23190.1	20706207
AT5G13840.1	KRH65519	AT1G23190.1	20706207
AT5G13840.1	KRH65565	AT1G23190.1	20706207
AT5G13840.1	KRH26168	AT1G78770.1	20706207
AT5G13840.1	KRH55075	AT1G78770.1	20706207
AT5G13840.1	KRG97883	AT2G04660.1	20706207
AT5G13840.1	KRH30995	AT2G04660.1	20706207
AT5G13840.1	KRH32716	AT2G04660.1	20706207
AT5G13840.1	KRH74904	AT2G04660.1	20706207
AT5G13840.1	KRH41728	AT2G20000.1	17944809
AT5G13840.1	KRH41728	AT2G20000.1	20706207
AT5G13840.1	KRH25124	AT2G27960.1	20706207
AT5G13840.1	KRH30550	AT2G27960.1	20706207
AT5G13840.1	KRH25124	AT2G27970.1	20706207
AT5G13840.1	KRH30550	AT2G27970.1	20706207
AT5G13840.1	KRH11210	AT2G39090.1	20706207
AT5G13840.1	KRH21040	AT2G39090.1	20706207
AT5G13840.1	KRG95339	AT2G42260.1	20706207
AT5G13840.1	KRH67023	AT2G42260.1	20706207
AT5G13840.1	KRH42973	AT3G20050.1	20706207
AT5G13840.1	KRH59103	AT3G20050.1	20706207
AT5G13840.1	KRH24006	AT3G48150.1	20706207
AT5G13840.1	KRH27971	AT3G48150.1	20706207
AT5G13840.1	KRH29310	AT3G48150.1	20706207
AT5G13840.1	KRH77487	AT3G48150.1	20706207
AT5G13840.1	KRG95339	AT3G57860.1	20706207
AT5G13840.1	KRH67023	AT3G57860.1	20706207
AT5G13840.1	KRH49954	AT4G21530.1	20706207
AT5G13840.1	KRH27566	AT4G34150.1	20706207
AT5G13840.1	KRH77964	AT4G34150.1	20706207
AT5G13840.1	KRH01617	AT5G02530.1	20706207
AT5G13840.1	KRH07006	AT5G02530.1	20706207
AT5G13840.1	KRH23040	AT5G02530.1	20706207
AT5G13840.1	KRH24828	AT5G02530.1	20706207
AT5G13840.1	KRH29829	AT5G02530.1	20706207
AT5G13840.1	KRH70494	AT5G02530.1	20706207
AT5G13840.1	KRH75241	AT5G02530.1	20706207
AT5G13840.1	KRH05109	AT5G25460.1	20706207
AT5G13840.1	KRH16010	AT5G25460.1	20706207
AT5G13840.1	KRH52488	AT5G25460.1	20706207
AT5G13840.1	KRH52489	AT5G25460.1	20706207
AT5G13840.1	KRG92501	AT5G26360.1	20706207
AT5G13840.1	KRH09301	AT5G26360.1	20706207
AT5G13840.1	KRH38791	AT5G26360.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97899	Soybean	plastid	95.4	97.55
VIT_13s0019g01840.t01	Wine grape	plastid	80.6	85.56
CDX70523	Canola	plastid	79.0	84.4
CDX78541	Canola	plastid	78.8	84.19
AT5G13840.1	Thale cress	plastid	80.8	83.99
Bra006219.1-P	Field mustard	plastid	80.2	82.51
PGSC0003DMT400076326	Potato	nucleus, plastid	79.2	78.88
Solyc06g043150.2.1	Tomato	nucleus, plastid	78.0	78.16
GSMUA_Achr5P07090_001	Banana	plastid	70.2	77.31
Os01t0972900-01	Rice	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	67.4	70.5
TraesCS3D01G533000.1	Wheat	plastid	67.8	70.19
TraesCS3B01G595600.1	Wheat	plastid	68.0	70.1
TraesCS3A01G527600.1	Wheat	plastid	67.4	69.2
EES02145	Sorghum	plastid	65.8	68.26
Zm00001d041957_P004	Maize	plastid	65.6	67.63
KRH57275	Soybean	nucleus	55.6	60.57
KRH77460	Soybean	nucleus, plastid	54.8	59.7
HORVU3Hr1G115170.1	Barley	cytosol, mitochondrion, nucleus, plastid	67.8	57.75
KRH27985	Soybean	nucleus, plastid	48.8	53.74
KRH04001	Soybean	mitochondrion	55.8	53.04
KRH77717	Soybean	nucleus	38.4	42.2
KRH27762	Soybean	nucleus	38.0	41.76
KRH44738	Soybean	nucleus	35.8	40.5
KRH68047	Soybean	nucleus	36.4	39.82
KRH70386	Soybean	cytosol	22.2	38.41
KRG94456	Soybean	cytosol	17.2	36.6
KRH33341	Soybean	nucleus	32.2	35.62
KRH08491	Soybean	cytosol	9.4	33.57
KRH07005	Soybean	nucleus	6.4	25.81
Os01t0973000-01	Rice	cytosol	0.8	1.42

Protein Annotations

MapMan:13.3.4.1.3	Gene3D:2.130.10.10	EntrezGene:547741	EMBL:ACUP02007112	EnsemblPlantsGene:GLYMA_11G219600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010997	GO:GO:0019538	GO:GO:0030234	GO:GO:0097027	GO:GO:1904668	UniProt:I1LMF9
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH30985	ProteinID:KRH30985	ProteinID:KRH30985.1
PFAM:PF08662	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	SMART:SM00320	SUPFAM:SSF50978
InterPro:TIF_beta_prop-like	UniParc:UPI000295ADF6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:31433173..31437848

Molecular Weight (calculated)

53962.8 Da

IEP (calculated)

9.760

GRAVY (calculated)

-0.361

Length

500 amino acids

Sequence
(BLAST)

001: MESPHAKKSG GLKLPAGMSG TSLRLDTAPA SSSFRSSIST LNSPSSLRSI SNLTSPSKSN SACSDRFIPC RSSSRLHTFG LVDRPSPVKE GSNEAYSRLL
101: KSELFGSDFA SPSLSSLSSP AGAAAPPSPL SPSKNMLRFK TDHSAAPSSP YSPSILGQQN GFTSDSSTPP PKPPRKVPKT PHKVLDAPSL QDDFYLNLVD
201: WSTQNVLAVG LGTCVYLWSA SNSKVTKLCD LGPYDGVCSV QWTREGSFIS IGTNLGQVQV WDGTQCKKVR TMGGHQTRTG VLAWNSRILA SGSRDRNILQ
301: HDMRVPGDFV SKLVGHKSEV CGLKWSCDDR ELASGGNDNQ LLVWNQHSQQ PVLRLTEHTA AVKAIAWSPH QSSLLVSGGG TADRCIRFWN TTNGHQLNCV
401: DTGSQVCNLA WSKNVNELVS THGYSQNQIM VWKYPSLTKV ATLTGHSMRV LYLAMSPDGQ TIVTGAGDET LRFWNVFPSM KAPAPVKDTG LWSLGRTQIR

Best Arabidopsis Sequence Match ( AT5G13840.1 )
(BLAST)

001: MASPQSTKTG LNLPAGMNQT SLRLETFSSS FRGISSLSSP SKSTCSDRFI PCRSSSRLHA FDLQDKEPTT PVKEGGNEAY SRLLKSELFG SDFASPLLSP
101: AGGQGSASSP MSPCTNMLRF KTDRSNSSPS SPFSPSILGN DNGHSSDSSP PPKPPRKVPK TPHKVLDAPS LQDDFYLNVV DWSSQNVLAV GLGTCVYLWT
201: ASNSKVTKLC DLGPNDSVCS VQWTREGSYI SIGTSHGQVQ VWDGTQCKRV RTMGGHQTRT GVLAWNSRIL SSGSRDRNIL QHDIRVQSDF VSKLVGHKSE
301: VCGLKWSHDD RELASGGNDN QLLVWNNHSQ QPILKLTEHT AAVKAITWSP HQSSLLASGG GTADRCIRFW NTTNGNQLNS IDTGSQVCNL AWSKNVNEIV
401: STHGYSQNQI MLWKYPSMSK VATLTGHSMR VLYLATSPDG QTIVTGAGDE TLRFWNVFPS VKMQTPVKDT GLWSLGRTQI R

Arabidopsis Description

FZR3Protein FIZZY-RELATED 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPL5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.