CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH40974
KRH57887
KRH59626
KRH63972

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14810.1	KRH40974	AT5G63610.1	20706207
AT1G14810.1	KRH57887	AT5G63610.1	20706207
AT1G14810.1	KRH59626	AT5G63610.1	20706207
AT1G14810.1	KRH63972	AT5G63610.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41742	Soybean	plastid	95.21	94.46
GSMUA_Achr10P...	Banana	cytosol	77.13	83.81
VIT_01s0011g05860.t01	Wine grape	plastid	82.18	81.53
Solyc01g005250.2.1	Tomato	plastid	79.26	78.22
PGSC0003DMT400058680	Potato	plastid	79.52	77.26
EER93410	Sorghum	mitochondrion	75.0	75.2
GSMUA_Achr6P11140_001	Banana	cytosol	57.98	73.9
Os03t0760700-01	Rice	plastid	73.4	73.6
TraesCS5A01G398300.1	Wheat	plastid	73.14	73.53
TraesCS5B01G403400.1	Wheat	plastid	72.07	72.46
TraesCS5D01G407800.1	Wheat	plastid	71.54	71.93
HORVU5Hr1G097020.5	Barley	plastid	70.48	70.86
Bra016680.1-P	Field mustard	cytosol	64.63	70.64
CDX84002	Canola	plastid	68.62	68.8
CDY52027	Canola	plastid	68.62	68.8
CDY45291	Canola	plastid	68.35	68.53
Bra026186.1-P	Field mustard	plastid	68.09	68.27
CDY51765	Canola	plastid	67.55	67.73
AT1G14810.1	Thale cress	plastid	67.55	67.73
CDY26323	Canola	extracellular	15.96	61.22
Bra037900.1-P	Field mustard	vacuole	16.76	41.72

Protein Annotations

KEGG:00220+1.2.1.38	KEGG:00260+1.2.1.11	KEGG:00261+1.2.1.11	KEGG:00270+1.2.1.11	KEGG:00300+1.2.1.11	EntrezGene:100793061
Gene3D:3.30.360.10	Gene3D:3.40.50.720	MapMan:4.1.2.2.2	EMBL:ACUP02003364	InterPro:Asp_semialdehyde_DH	InterPro:Asp_semialdehyde_DH_beta
EnsemblPlantsGene:GLYMA_05G240700	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003942	GO:GO:0004073
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009088
GO:GO:0009089	GO:GO:0009097	GO:GO:0009987	GO:GO:0016620	GO:GO:0046983	GO:GO:0050661
GO:GO:0051287	GO:GO:0055114	UniProt:I1K5I3	EnsemblPlants:KRH60442	ProteinID:KRH60442	ProteinID:KRH60442.1
HAMAP:MF_02121	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01118	PFAM:PF02774	PIRSF:PIRSF000148	PANTHER:PTHR10174
PANTHER:PTHR10174:SF2	MetaCyc:PWY-2941	MetaCyc:PWY-2942	MetaCyc:PWY-5097	MetaCyc:PWY-5154	MetaCyc:PWY-6559
MetaCyc:PWY-6562	MetaCyc:PWY-7153	MetaCyc:PWY-7400	SMART:SM00859	SUPFAM:SSF51735	SUPFAM:SSF55347
InterPro:Semialdehyde_DH_NAD-bd	InterPro:Semialdhyde_DH_dimer_dom	TIGRFAMs:TIGR01296	UniParc:UPI000233A6FF	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:41572819..41576662

Molecular Weight (calculated)

41142.5 Da

IEP (calculated)

7.931

GRAVY (calculated)

-0.189

Length

376 amino acids

Sequence
(BLAST)

001: MASLSVLRHN HLFSGPLPAR PKPTSSSSSR IRMSLRENGP SIAVVGVTGA VGQEFLSVLS DRDFPYRSIH MLASKRSAGR RITFEDRDYV VQELTPESFD
101: GVDIALFSAG GSISKHFGPI AVNRGTVVVD NSSAFRMDEK VPLVIPEVNP EAMQNIKAGT GKGALIANPN CSTIICLMAA TPLHRRAKVL RMVVSTYQAA
201: SGAGAAAMEE LELQTREVLE GKPPTCKIFN RQYAFNLFSH NASVLSKGFN EEEMKMVKET RKIWNDKDVK VTATCIRVPI MRAHAESVNL QFERPLDEDT
301: ARDILKNAPG VVVIDDRESN HFPTPLEVSN KDDVAVGRIR QDLSQDGNQG LDIFVCGDQI RKGAALNAIQ IAEMLL

Best Arabidopsis Sequence Match ( AT1G14810.1 )
(BLAST)

001: MATFTHQTPQ THFLSRLPLR AKPRHFSARV KMSLQESAPS LAVVGVTGAV GQEFLSVLSD RDFPYSSIKM LASKRSAGKR VAFDGHEYTV EELTADSFNG
101: VDIALFSAGG SISKEFGPLA AEKGTIVVDN SSAFRMVDGV PLVIPEVNPE AMKGIKVGMG KGALIANPNC STIICLMAVT PLHHHAKVKR MVVSTYQAAS
201: GAGAAAMEEL VQQTREVLEG KPPTCNIFGQ QYAFNLFSHN APILDNGYNE EEMKLVKETR KIWNDTEVKV TATCIRVPVM RAHAESVNLQ FENPLDENTA
301: REILKKAPGV YIIDDRASNT FPTPLDVSNK DDVAVGRIRR DVSQDGNFGL DIFVCGDQIR KGAALNAVQI AEMLL

Arabidopsis Description

Aspartate-semialdehyde dehydrogenase, putative [Source:UniProtKB/TrEMBL;Acc:Q8VYI4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.