Factsheet for TraesCS5A01G398300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 16595579
plastid: 18419817

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G198100.2
TraesCS1B01G212800.1
TraesCS1D01G201600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14810.1	TraesCS1A01G198100.2	AT5G63610.1	20706207
AT1G14810.1	TraesCS1B01G212800.1	AT5G63610.1	20706207
AT1G14810.1	TraesCS1D01G201600.1	AT5G63610.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G407800.1	Wheat	plastid	98.4	98.4
TraesCS5B01G403400.1	Wheat	plastid	98.4	98.4
HORVU5Hr1G097020.5	Barley	plastid	96.52	96.52
Os03t0760700-01	Rice	plastid	90.91	90.67
EER93410	Sorghum	mitochondrion	88.5	88.27
GSMUA_Achr10P...	Banana	cytosol	70.86	76.59
KRH60442	Soybean	nucleus	73.53	73.14
Solyc01g005250.2.1	Tomato	plastid	73.8	72.44
KRH41742	Soybean	plastid	72.73	71.77
PGSC0003DMT400058680	Potato	plastid	73.8	71.32
VIT_01s0011g05860.t01	Wine grape	plastid	70.59	69.66
GSMUA_Achr6P11140_001	Banana	cytosol	54.01	68.47
Bra016680.1-P	Field mustard	cytosol	62.03	67.44
CDY26323	Canola	extracellular	16.84	64.29
CDY52027	Canola	plastid	63.64	63.47
CDY45291	Canola	plastid	63.64	63.47
CDX84002	Canola	plastid	63.64	63.47
CDY51765	Canola	plastid	63.37	63.2
Bra026186.1-P	Field mustard	plastid	63.37	63.2
AT1G14810.1	Thale cress	plastid	63.1	62.93
Bra037900.1-P	Field mustard	vacuole	17.65	43.71

Protein Annotations

KEGG:00220+1.2.1.38	KEGG:00260+1.2.1.11	KEGG:00261+1.2.1.11	KEGG:00270+1.2.1.11	KEGG:00300+1.2.1.11	Gene3D:3.30.360.10
Gene3D:3.40.50.720	MapMan:4.1.2.2.2	InterPro:Asp_semialdehyde_DH	InterPro:Asp_semialdehyde_DH_beta	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004073	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652
GO:GO:0009058	GO:GO:0009086	GO:GO:0009088	GO:GO:0009089	GO:GO:0009097	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016620	GO:GO:0046983	GO:GO:0050661
GO:GO:0051287	GO:GO:0055114	HAMAP:MF_02121	InterPro:NAD(P)-bd_dom_sf	PFAM:PF01118	PFAM:PF02774
PIRSF:PIRSF000148	PANTHER:PTHR10174	PANTHER:PTHR10174:SF2	SMART:SM00859	SUPFAM:SSF51735	SUPFAM:SSF55347
InterPro:Semialdehyde_DH_NAD-bd	InterPro:Semialdhyde_DH_dimer_dom	TIGRFAMs:TIGR01296	EnsemblPlantsGene:TraesCS5A01G398300	EnsemblPlants:TraesCS5A01G398300.1	SEG:seg

Description

No Description!

Coordinates

chr5A:+:592289746..592292435

Molecular Weight (calculated)

40398.4 Da

IEP (calculated)

7.168

GRAVY (calculated)

-0.164

Length

374 amino acids

Sequence
(BLAST)

001: MQAAAAVHRP HLLAASPLGG RASRRPSTVR MALREDGPSV AIVGATGAVG QEFLRVITAR DFPYRSLRLL ASERSAGKRI DFEGRDYTVQ DLAAPGAFDG
101: VDIALFSAGG SISRAHAPAA VASGAVVVDN SSAYRMDPDV PLVIPEVNPE AMADVRLGKG AIVANPNCST IICLMAVTPL HRHAKVKRMV VSTYQAASGA
201: GAAAMEELKL QTREVLEGKP PTCNIFSQQY AFNIFSHNAP IVENGYNEEE MKMVKETRKI WNDKDVRVTA TCIRVPTMRA HAESVNLQFE KPLDEDTARE
301: ILRAAPGVTI SDDRAANRFP TPLEVSDKDD VSVGRIRQDL SQDDNRGLEL FVCGDQIRKG AALNAVQIAE MLLK

Best Arabidopsis Sequence Match ( AT1G14810.1 )
(BLAST)

001: MATFTHQTPQ THFLSRLPLR AKPRHFSARV KMSLQESAPS LAVVGVTGAV GQEFLSVLSD RDFPYSSIKM LASKRSAGKR VAFDGHEYTV EELTADSFNG
101: VDIALFSAGG SISKEFGPLA AEKGTIVVDN SSAFRMVDGV PLVIPEVNPE AMKGIKVGMG KGALIANPNC STIICLMAVT PLHHHAKVKR MVVSTYQAAS
201: GAGAAAMEEL VQQTREVLEG KPPTCNIFGQ QYAFNLFSHN APILDNGYNE EEMKLVKETR KIWNDTEVKV TATCIRVPVM RAHAESVNLQ FENPLDENTA
301: REILKKAPGV YIIDDRASNT FPTPLDVSNK DDVAVGRIRR DVSQDGNFGL DIFVCGDQIR KGAALNAVQI AEMLL

Arabidopsis Description

Aspartate-semialdehyde dehydrogenase, putative [Source:UniProtKB/TrEMBL;Acc:Q8VYI4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.