CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX81189
CDY60036

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14810.1	CDX81189	AT5G63610.1	20706207
AT1G14810.1	CDY60036	AT5G63610.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52027	Canola	plastid	97.87	97.87
Bra016680.1-P	Field mustard	cytosol	89.6	97.67
CDY45291	Canola	plastid	95.2	95.2
CDY51765	Canola	plastid	94.4	94.4
AT1G14810.1	Thale cress	plastid	93.07	93.07
CDY26323	Canola	extracellular	19.2	73.47
GSMUA_Achr10P...	Banana	cytosol	66.13	71.68
KRH41742	Soybean	plastid	70.4	69.66
KRH60442	Soybean	nucleus	68.8	68.62
Solyc01g005250.2.1	Tomato	plastid	69.6	68.5
PGSC0003DMT400058680	Potato	plastid	69.6	67.44
VIT_01s0011g05860.t01	Wine grape	plastid	67.47	66.75
Os03t0760700-01	Rice	plastid	64.27	64.27
EER93410	Sorghum	mitochondrion	64.0	64.0
TraesCS5A01G398300.1	Wheat	plastid	63.47	63.64
TraesCS5B01G403400.1	Wheat	plastid	62.4	62.57
TraesCS5D01G407800.1	Wheat	plastid	62.13	62.3
HORVU5Hr1G097020.5	Barley	plastid	61.33	61.5
GSMUA_Achr6P11140_001	Banana	cytosol	47.2	60.0

Protein Annotations

KEGG:00220+1.2.1.38	KEGG:00260+1.2.1.11	KEGG:00261+1.2.1.11	KEGG:00270+1.2.1.11	KEGG:00300+1.2.1.11	Gene3D:3.30.360.10
Gene3D:3.40.50.720	MapMan:4.1.2.2.2	GO:A0A078D4F0	InterPro:Asp_semialdehyde_DH	InterPro:Asp_semialdehyde_DH_beta	EnsemblPlants:CDX84002
ProteinID:CDX84002	ProteinID:CDX84002.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003942
GO:GO:0004073	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0008150	GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009086
GO:GO:0009088	GO:GO:0009089	GO:GO:0009097	GO:GO:0009987	GO:GO:0016620	GO:GO:0046983
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00139808001	HAMAP:MF_02121	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01118	PFAM:PF02774	PIRSF:PIRSF000148	PANTHER:PTHR10174	PANTHER:PTHR10174:SF2	MetaCyc:PWY-2941
MetaCyc:PWY-2942	MetaCyc:PWY-5097	MetaCyc:PWY-5154	MetaCyc:PWY-6559	MetaCyc:PWY-6562	MetaCyc:PWY-7153
MetaCyc:PWY-7400	SMART:SM00859	SUPFAM:SSF51735	SUPFAM:SSF55347	InterPro:Semialdehyde_DH_NAD-bd	InterPro:Semialdhyde_DH_dimer_dom
TIGRFAMs:TIGR01296	UniPathway:UPA00034	UniPathway:UPA00050	UniPathway:UPA00051	UniPathway:UPA00068	UniParc:UPI0004EF0D1D
SEG:seg	:	:	:	:	:

Description

BnaC08g16430D

Coordinates

chrLK031834:+:1677911..1679985

Molecular Weight (calculated)

40682.8 Da

IEP (calculated)

7.539

GRAVY (calculated)

-0.131

Length

375 amino acids

Sequence
(BLAST)

001: MATLTHHTPQ TGFLSRLPLR PKPRAFSARV KMSLQESAPS LAVVGVTGAV GQEFLSVLSD RDFPYSSVKM LASKRSAGKR VAFDGREYTV EELTAESFDG
101: VDIALFSAGG SISKEFGPRA AERGTIVVDN SSAFRMVEGV PLVIPEVNPE AMKGIKVGNG KGALIANPNC STIICLMAVT PLHHHAKVKR MVVSTYQAAS
201: GAGAAAMEEL VQQTREVLAG KPPTCNIFSQ QYAFNLFSHN APITENGYNE EEMKLVKETR KIWNDTEVKV TATCIRVPVM RAHAESVNLQ FENPLDENTA
301: RELLRKASGV YIIDDRASNT FPTPLDVSNK DDVAVGRIRR DVSQDGNFGL DIFVCGDQIR KGAALNAVQI AEMLL

Best Arabidopsis Sequence Match ( AT1G14810.1 )
(BLAST)

001: MATFTHQTPQ THFLSRLPLR AKPRHFSARV KMSLQESAPS LAVVGVTGAV GQEFLSVLSD RDFPYSSIKM LASKRSAGKR VAFDGHEYTV EELTADSFNG
101: VDIALFSAGG SISKEFGPLA AEKGTIVVDN SSAFRMVDGV PLVIPEVNPE AMKGIKVGMG KGALIANPNC STIICLMAVT PLHHHAKVKR MVVSTYQAAS
201: GAGAAAMEEL VQQTREVLEG KPPTCNIFGQ QYAFNLFSHN APILDNGYNE EEMKLVKETR KIWNDTEVKV TATCIRVPVM RAHAESVNLQ FENPLDENTA
301: REILKKAPGV YIIDDRASNT FPTPLDVSNK DDVAVGRIRR DVSQDGNFGL DIFVCGDQIR KGAALNAVQI AEMLL

Arabidopsis Description

Aspartate-semialdehyde dehydrogenase, putative [Source:UniProtKB/TrEMBL;Acc:Q8VYI4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.