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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:plastid
Plant-mPloc:mitochondrion
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 17189339
plastid: 21433289
plasma membrane: 27800704
plastid: 27992503
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 17189339 doi
T Kleffmann, A von Zychlinski, D Russenberger, M Hirsch-Hoffmann, P Gehrig, W Gruissem, S Baginsky
Institute of Plant Sciences, Eidgenössische Technische Hochschule Zurich, 8092 Zurich, Switzerland.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os10t0580300-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G14810.1 Os10t0580300-01 AT5G63610.1 20706207
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS5D01G407800.1 Wheat plastid 90.93 91.18
TraesCS5A01G398300.1 Wheat plastid 90.67 90.91
TraesCS5B01G403400.1 Wheat plastid 90.4 90.64
EER93410 Sorghum mitochondrion 90.13 90.13
HORVU5Hr1G097020.5 Barley plastid 89.6 89.84
GSMUA_Achr10P... Banana cytosol 73.87 80.06
KRH60442 Soybean nucleus 73.6 73.4
VIT_01s0011g05860.t01 Wine grape plastid 73.07 72.3
KRH41742 Soybean plastid 73.07 72.3
GSMUA_Achr6P11140_001 Banana cytosol 56.8 72.2
Solyc01g005250.2.1 Tomato plastid 73.07 71.92
PGSC0003DMT400058680 Potato plastid 73.33 71.06
Bra016680.1-P Field mustard cytosol 61.87 67.44
CDY26323 Canola extracellular 17.33 66.33
CDX84002 Canola plastid 64.27 64.27
CDY52027 Canola plastid 64.0 64.0
CDY45291 Canola plastid 64.0 64.0
Bra026186.1-P Field mustard plastid 63.73 63.73
CDY51765 Canola plastid 63.2 63.2
AT1G14810.1 Thale cress plastid 62.93 62.93
Bra037900.1-P Field mustard vacuole 17.87 44.37
Protein Annotations
KEGG:00220+1.2.1.38KEGG:00260+1.2.1.11KEGG:00261+1.2.1.11KEGG:00270+1.2.1.11KEGG:00300+1.2.1.11Gene3D:3.30.360.10
Gene3D:3.40.50.720MapMan:4.1.2.2.2EntrezGene:4334188ProteinID:AAK63930.1ProteinID:ABF99001.1InterPro:Asp_semialdehyde_DH
InterPro:Asp_semialdehyde_DH_betaProteinID:BAF13261.1ProteinID:BAS86503.1GO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0003942GO:GO:0004073GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0008150GO:GO:0008152GO:GO:0008652
GO:GO:0009058GO:GO:0009086GO:GO:0009088GO:GO:0009089GO:GO:0009097GO:GO:0009507
GO:GO:0009536GO:GO:0009570GO:GO:0009987GO:GO:0016620GO:GO:0046983GO:GO:0050661
GO:GO:0051287GO:GO:0055114HAMAP:MF_02121InterPro:NAD(P)-bd_dom_sfEnsemblPlantsGene:Os03g0760700EnsemblPlants:Os03t0760700-01
PFAM:PF01118PFAM:PF02774PIRSF:PIRSF000148PANTHER:PTHR10174PANTHER:PTHR10174:SF2UniProt:Q93Y73
SMART:SM00859SUPFAM:SSF51735SUPFAM:SSF55347InterPro:Semialdehyde_DH_NAD-bdInterPro:Semialdhyde_DH_dimer_domTIGRFAMs:TIGR01296
UniParc:UPI00000A9994RefSeq:XP_015628377.1SEG:seg:::
Description
Similar to Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) (Fragment). (Os03t0760700-01)
Coordinates
chr3:+:31460436..31463570
Molecular Weight (calculated)
40180.2 Da
IEP (calculated)
7.222
GRAVY (calculated)
-0.090
Length
375 amino acids
Sequence
(BLAST)
001: MQAAAAAVHR PHLLGAYPGG GRARRPSSTV RMALREDGPS VAIVGATGAV GQEFLRVISS RGFPYRSLRL LASERSAGKR LPFEGQEYTV QDLAAPGAFD
101: GVDIALFSAG GGVSRAHAPA AVASGAVVVD NSSAFRMDPE VPLVIPEVNP EAMAHVRLGK GAIVANPNCS TIICLMAATP LHRHAKVVRM VVSTYQAASG
201: AGAAAMEELK LQTQEVLAGK APTCNIFSQQ YAFNIFSHNA PIVENGYNEE EMKMVKETRK IWNDKDVKVT ATCIRVPVMR AHAESVNLQF EKPLDEDTAR
301: EILRAAEGVT IIDDRASNRF PTPLEVSDKD DVAVGRIRQD LSQDDNKGLD IFVCGDQIRK GAALNAVQIA EMLLK
Best Arabidopsis Sequence Match ( AT1G14810.1 )
(BLAST)
001: MATFTHQTPQ THFLSRLPLR AKPRHFSARV KMSLQESAPS LAVVGVTGAV GQEFLSVLSD RDFPYSSIKM LASKRSAGKR VAFDGHEYTV EELTADSFNG
101: VDIALFSAGG SISKEFGPLA AEKGTIVVDN SSAFRMVDGV PLVIPEVNPE AMKGIKVGMG KGALIANPNC STIICLMAVT PLHHHAKVKR MVVSTYQAAS
201: GAGAAAMEEL VQQTREVLEG KPPTCNIFGQ QYAFNLFSHN APILDNGYNE EEMKLVKETR KIWNDTEVKV TATCIRVPVM RAHAESVNLQ FENPLDENTA
301: REILKKAPGV YIIDDRASNT FPTPLDVSNK DDVAVGRIRR DVSQDGNFGL DIFVCGDQIR KGAALNAVQI AEMLL
Arabidopsis Description
Aspartate-semialdehyde dehydrogenase, putative [Source:UniProtKB/TrEMBL;Acc:Q8VYI4]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.