Factsheet for Solyc01g005250.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc12g027870.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G14810.1	Solyc12g027870.1.1	AT5G63610.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058680	Potato	plastid	97.11	95.61
GSMUA_Achr10P...	Banana	cytosol	74.54	82.08
VIT_01s0011g05860.t01	Wine grape	plastid	80.84	81.27
KRH41742	Soybean	plastid	79.53	79.95
KRH60442	Soybean	nucleus	78.22	79.26
EER93410	Sorghum	mitochondrion	72.97	74.13
TraesCS5A01G398300.1	Wheat	plastid	72.44	73.8
Bra016680.1-P	Field mustard	cytosol	66.4	73.55
TraesCS5B01G403400.1	Wheat	plastid	71.92	73.26
Os03t0760700-01	Rice	plastid	71.92	73.07
TraesCS5D01G407800.1	Wheat	plastid	71.39	72.73
GSMUA_Achr6P11140_001	Banana	cytosol	55.91	72.2
HORVU5Hr1G097020.5	Barley	plastid	70.08	71.39
AT1G14810.1	Thale cress	plastid	69.03	70.13
Bra026186.1-P	Field mustard	plastid	68.77	69.87
CDY52027	Canola	plastid	68.77	69.87
CDY45291	Canola	plastid	68.77	69.87
CDX84002	Canola	plastid	68.5	69.6
CDY51765	Canola	plastid	68.24	69.33
CDY26323	Canola	extracellular	17.59	68.37
Bra037900.1-P	Field mustard	vacuole	18.37	46.36

Protein Annotations

KEGG:00220+1.2.1.38	KEGG:00260+1.2.1.11	KEGG:00261+1.2.1.11	KEGG:00270+1.2.1.11	KEGG:00300+1.2.1.11	Gene3D:3.30.360.10
Gene3D:3.40.50.720	MapMan:4.1.2.2.2	InterPro:Asp_semialdehyde_DH	InterPro:Asp_semialdehyde_DH_beta	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003942	GO:GO:0004073	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0008150	GO:GO:0008152
GO:GO:0008652	GO:GO:0009058	GO:GO:0009086	GO:GO:0009088	GO:GO:0009089	GO:GO:0009097
GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016620	GO:GO:0046983
GO:GO:0050661	GO:GO:0051287	GO:GO:0055114	UniProt:K4AS92	HAMAP:MF_02121	InterPro:NAD(P)-bd_dom_sf
PFAM:PF01118	PFAM:PF02774	PIRSF:PIRSF000148	PANTHER:PTHR10174	PANTHER:PTHR10174:SF2	SMART:SM00859
SUPFAM:SSF51735	SUPFAM:SSF55347	InterPro:Semialdehyde_DH_NAD-bd	InterPro:Semialdhyde_DH_dimer_dom	EnsemblPlantsGene:Solyc01g005250.2	EnsemblPlants:Solyc01g005250.2.1
TIGRFAMs:TIGR01296	UniParc:UPI0002761ABB	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:191856..195078

Molecular Weight (calculated)

41523.7 Da

IEP (calculated)

7.503

GRAVY (calculated)

-0.199

Length

381 amino acids

Sequence
(BLAST)

001: MNTPALSLRH NHFLNGSSAL VSGIRLPRSS SSPFRVRMSL QENGPSVAVV GVTGAVGQEF LSVLSDRNFP YRSLKLLASK RSAGKSMKFE ERDYTVEELT
101: EDSFDGIDIA LFSAGGSISK KFGPLAAQKG TIVVDNSSAF RMDENVPLVI PEVNPEAMAH VKLGSGKGAL IANPNCSTII CLMAVTPLHR RAKVKRMVVS
201: TYQAASGAGA AAMEELVQQT REVLEGKEPT CNIFNQQYAF NLFSHNAPVQ PNGYNEEEMK LVKETRKIWS DKDVKVTATC IRVPVMRAHA ESVNLQFENP
301: LDENTARDIL KNAPGIVVVD DRASNRFPTP LEVSNKDDVA VGRVRRDVSQ DGDYGLDIFV CGDQIRKGAA LNAIQIAEML L

Best Arabidopsis Sequence Match ( AT1G14810.1 )
(BLAST)

001: MATFTHQTPQ THFLSRLPLR AKPRHFSARV KMSLQESAPS LAVVGVTGAV GQEFLSVLSD RDFPYSSIKM LASKRSAGKR VAFDGHEYTV EELTADSFNG
101: VDIALFSAGG SISKEFGPLA AEKGTIVVDN SSAFRMVDGV PLVIPEVNPE AMKGIKVGMG KGALIANPNC STIICLMAVT PLHHHAKVKR MVVSTYQAAS
201: GAGAAAMEEL VQQTREVLEG KPPTCNIFGQ QYAFNLFSHN APILDNGYNE EEMKLVKETR KIWNDTEVKV TATCIRVPVM RAHAESVNLQ FENPLDENTA
301: REILKKAPGV YIIDDRASNT FPTPLDVSNK DDVAVGRIRR DVSQDGNFGL DIFVCGDQIR KGAALNAVQI AEMLL

Arabidopsis Description

Aspartate-semialdehyde dehydrogenase, putative [Source:UniProtKB/TrEMBL;Acc:Q8VYI4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.