Factsheet for Solyc12g027870.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g107730.2.1	nucleus
Solyc01g108610.2.1	nucleus
Solyc02g064860.1.1	nucleus
Solyc02g064900.1.1	nucleus
Solyc02g064910.1.1	nucleus
Solyc02g090680.2.1	nucleus
Solyc02g092980.2.1	nucleus
Solyc03g006800.1.1
Solyc03g120440.1.1	nucleus
Solyc05g006050.2.1	endoplasmic reticulum
Solyc05g051410.2.1	nucleus
Solyc06g065680.2.1	nucleus
Solyc11g010460.1.1	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63610.1	Solyc03g120440.1.1	AT1G15570.1	20407024
AT5G63610.1	Solyc05g006050.2.1	AT1G70210.1	20407024
AT5G63610.1	Solyc01g108610.2.1	AT3G19150.1	20407024
AT5G63610.1	Solyc02g090680.2.1	AT3G19150.1	20407024
AT5G63610.1	Solyc02g064860.1.1	AT3G50070.1	20407024
AT5G63610.1	Solyc02g064900.1.1	AT3G50070.1	20407024
AT5G63610.1	Solyc02g064910.1.1	AT3G50070.1	20407024
AT5G63610.1	Solyc02g092980.2.1	AT3G50070.1	20407024
AT5G63610.1	Solyc01g107730.2.1	AT4G34160.1	20407024
AT5G63610.1	Solyc05g051410.2.1	AT5G10440.1	20407024
AT5G63610.1	Solyc11g010460.1.1	AT5G10440.1	20407024
AT5G63610.1	Solyc06g065680.2.1	AT5G11300.1	20407024
AT5G63610.1	Solyc03g006800.1.1	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59626	Soybean	cytosol	79.76	86.45
KRH57887	Soybean	cytosol	50.0	71.19
KRH63972	Soybean	cytosol	89.29	64.94
KRH40974	Soybean	cytosol, nucleus	86.61	63.12
VIT_07s0031g02680.t01	Wine grape	cytosol	89.29	62.37
OQU92050	Sorghum	cytosol	85.42	60.93
GSMUA_Achr11P...	Banana	cytosol	84.23	60.73
AT5G63610.1	Thale cress	cytosol	84.23	60.21
HORVU1Hr1G051380.3	Barley	cytosol	84.23	60.21
TraesCS1D01G201600.1	Wheat	cytosol	84.23	60.21
TraesCS1A01G198100.2	Wheat	cytosol	84.23	60.21
GSMUA_Achr5P18030_001	Banana	cytosol	83.63	60.17
Zm00001d014438_P001	Maize	cytosol	84.23	60.08
Bra037748.1-P	Field mustard	cytosol	83.63	60.04
TraesCS1B01G212800.1	Wheat	cytosol	83.93	60.0
Os10t0580300-01	Rice	cytosol, plasma membrane	84.82	60.0
CDY60036	Canola	cytosol	83.33	59.83
CDX81189	Canola	cytosol, nucleus, plastid	75.3	58.16
Solyc12g095860.1.1	Tomato	cytosol, nucleus	38.99	44.56
Solyc11g070140.1.1	Tomato	cytosol	38.39	43.88
Solyc10g074720.1.1	Tomato	cytosol, nucleus	38.1	42.24
Solyc04g082840.2.1	Tomato	cytosol	37.2	39.68
Solyc08g066330.1.1	Tomato	cytosol	34.82	38.11
Solyc08g067450.1.1	Tomato	cytosol	32.44	34.82
Solyc08g081280.2.1	Tomato	cytosol, nucleus	36.9	29.59
Solyc08g005470.2.1	Tomato	cytosol	33.33	24.83
Solyc06g083210.2.1	Tomato	cytosol	32.14	24.71
Solyc08g075890.2.1	Tomato	cytosol	32.74	24.28
Solyc05g014760.2.1	Tomato	nucleus	39.29	16.32

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.5	MapMan:15.3.3.4.3	MapMan:18.4.3.1.5	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0004693	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0007346	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016592	GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719
UniProt:K4DDV5	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF92	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	EnsemblPlantsGene:Solyc12g027870.1	EnsemblPlants:Solyc12g027870.1.1	UniParc:UPI0002769CEA	SEG:seg

Description

Cyclin-dependent kinase E-1 [Source:Projected from Arabidopsis thaliana (AT5G63610) UniProtKB/Swiss-Prot;Acc:Q84TI6]

Coordinates

chr12:-:27696286..27704074

Molecular Weight (calculated)

38395.6 Da

IEP (calculated)

9.217

GRAVY (calculated)

-0.294

Length

336 amino acids

Sequence
(BLAST)

001: MGDVRGNSNS NRPEWLQQYD LIGKIGEGTY GLVFLAKIKA NRSKSIAIKK FKQSKDGDGV SPTAIREIML LREISHENVV KLVNVHINQA DMSLYLAFDY
101: AEHDLYEIIR HHRDKVILSI NPYTVKSLLW QLLNGLNYLH SNWIVHRDLK PSNILVMGEG EEHGVVKIAD FGLARIYQAP LKPLAENGVV VTIWYRAPEL
201: LLGAKHYTSA VDMWAVGCIF AELLTLKPLF QGQEVKGTPN PFQLDQLDKI FKVLGHPTPE KWPTLVNLPH WQSDVQRIQG HKYDNPALYS VLHMSPKSPA
301: YDLLSKMLEY DPRKRITATQ ALEHEYFRME PLPGRK

Best Arabidopsis Sequence Match ( AT5G63610.1 )
(BLAST)

001: MGDGSSSRSN SSNSTSEKPE WLQQYNLVGK IGEGTYGLVF LARTKTPPKR PIAIKKFKQS KDGDGVSPTA IREIMLLREI SHENVVKLVN VHINFADMSL
101: YLAFDYAEYD LYEIIRHHRD KVGHSLNTYT VKSLLWQLLN GLNYLHSNWI IHRDLKPSNI LVMGDAEEHG IVKIADFGLA RIYQAPLKPL SDNGVVVTIW
201: YRAPELLLGS KHYTSAVDMW AVGCIFAELL TLKPLFQGAE AKSSQNPFQL DQLDKIFKIL GHPTMDKWPT LVNLPHWQND VQHIQAHKYD SVGLHNVVHL
301: NQKSPAYDLL SKMLEYDPLK RITASQALEH EYFRMDPLPG RNAFVASQPM EKNVNYPTRP VDTNTDFEGT TSINPPQAVA AGNVAGNMAG AHGMGSRSMP
401: RPMVAHNMQR MQQSQGMMAY NFPAQAGLNP SVPLQQQRGM AQPHQQQQLR RKDPGMGMSG YAPPNKSRRL

Arabidopsis Description

CDKE-1Cyclin-dependent kinase E-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.