Factsheet for GSMUA_Achr5P18030_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...	nucleus
GSMUA_Achr10P...	nucleus
GSMUA_Achr10P...	nucleus
GSMUA_Achr10P...	nucleus
GSMUA_Achr10P...	nucleus
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P09780_001	nucleus, nucleus
GSMUA_Achr1P14000_001	nucleus
GSMUA_Achr2P05260_001	nucleus, nucleus
GSMUA_Achr2P22370_001	nucleus
GSMUA_Achr3P01010_001	nucleus, nucleus
GSMUA_Achr3P06030_001	endoplasmic reticulum
GSMUA_Achr3P06730_001	nucleus
GSMUA_Achr3P12320_001
GSMUA_Achr3P13140_001	nucleus, nucleus
GSMUA_Achr3P25340_001	nucleus
GSMUA_Achr4P07110_001	nucleus
GSMUA_Achr4P20220_001	nucleus, nucleus
GSMUA_Achr4P27220_001
GSMUA_Achr5P03320_001
GSMUA_Achr5P17920_001	nucleus
GSMUA_Achr5P22980_001	nucleus
GSMUA_Achr6P02210_001	nucleus
GSMUA_Achr6P07740_001	nucleus
GSMUA_Achr6P16910_001	nucleus
GSMUA_Achr7P12850_001	nucleus
GSMUA_Achr7P19040_001	nucleus
GSMUA_Achr7P19980_001	endoplasmic reticulum
GSMUA_Achr8P00050_001
GSMUA_Achr8P23430_001	nucleus
GSMUA_Achr9P15070_001	nucleus
GSMUA_Achr9P27040_001	nucleus
GSMUA_Achr9P28180_001	endoplasmic reticulum
GSMUA_AchrUn_...	nucleus, nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63610.1	GSMUA_Achr1P14000_001	AT1G15570.1	20407024
AT5G63610.1	GSMUA_Achr3P25340_001	AT1G15570.1	20407024
AT5G63610.1	GSMUA_Achr3P06030_001	AT1G70210.1	20407024
AT5G63610.1	GSMUA_Achr7P19980_001	AT1G70210.1	20407024
AT5G63610.1	GSMUA_Achr9P28180_001	AT1G70210.1	20407024
AT5G63610.1	GSMUA_Achr10P...	AT3G19150.1	20407024
AT5G63610.1	GSMUA_Achr10P...	AT3G19150.1	20407024
AT5G63610.1	GSMUA_Achr2P22370_001	AT3G19150.1	20407024
AT5G63610.1	GSMUA_Achr9P27040_001	AT3G19150.1	20407024
AT5G63610.1	GSMUA_Achr1P09780_001	AT3G50070.1	20407024
AT5G63610.1	GSMUA_Achr2P05260_001	AT3G50070.1	20407024
AT5G63610.1	GSMUA_Achr3P01010_001	AT3G50070.1	20407024
AT5G63610.1	GSMUA_Achr3P13140_001	AT3G50070.1	20407024
AT5G63610.1	GSMUA_Achr4P20220_001	AT3G50070.1	20407024
AT5G63610.1	GSMUA_AchrUn_...	AT3G50070.1	20407024
AT5G63610.1	GSMUA_Achr1P09780_001	AT4G34160.1	20407024
AT5G63610.1	GSMUA_Achr2P05260_001	AT4G34160.1	20407024
AT5G63610.1	GSMUA_Achr3P01010_001	AT4G34160.1	20407024
AT5G63610.1	GSMUA_Achr3P13140_001	AT4G34160.1	20407024
AT5G63610.1	GSMUA_Achr4P20220_001	AT4G34160.1	20407024
AT5G63610.1	GSMUA_AchrUn_...	AT4G34160.1	20407024
AT5G63610.1	GSMUA_Achr10P...	AT4G37630.1	20407024
AT5G63610.1	GSMUA_Achr4P07110_001	AT4G37630.1	20407024
AT5G63610.1	GSMUA_Achr6P07740_001	AT4G37630.1	20407024
AT5G63610.1	GSMUA_Achr6P16910_001	AT4G37630.1	20407024
AT5G63610.1	GSMUA_Achr10P...	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr10P...	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr3P06730_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr5P17920_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr5P22980_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr6P02210_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr7P12850_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr7P19040_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr8P23430_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr9P15070_001	AT5G10440.1	20407024
AT5G63610.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT5G63610.1	GSMUA_Achr11P...	AT5G51910.1	21798944
AT5G63610.1	GSMUA_Achr3P12320_001	AT5G51910.1	21798944
AT5G63610.1	GSMUA_Achr4P27220_001	AT5G51910.1	21798944
AT5G63610.1	GSMUA_Achr5P03320_001	AT5G51910.1	21798944
AT5G63610.1	GSMUA_Achr8P00050_001	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	92.51	92.7
Solyc12g027870.1.1	Tomato	cytosol	60.17	83.63
KRH59626	Soybean	cytosol	55.25	83.23
TraesCS1A01G198100.2	Wheat	cytosol	80.73	80.21
TraesCS1D01G201600.1	Wheat	cytosol	80.73	80.21
Os10t0580300-01	Rice	cytosol, plasma membrane	81.58	80.21
HORVU1Hr1G051380.3	Barley	cytosol	80.51	80.0
TraesCS1B01G212800.1	Wheat	cytosol	80.51	80.0
OQU92050	Sorghum	cytosol	80.51	79.83
Zm00001d014438_P001	Maize	cytosol	79.44	78.77
KRH63972	Soybean	cytosol	76.45	77.27
VIT_07s0031g02680.t01	Wine grape	cytosol	79.23	76.92
KRH40974	Soybean	cytosol, nucleus	75.8	76.79
AT5G63610.1	Thale cress	cytosol	75.37	74.89
CDY60036	Canola	cytosol	72.81	72.65
CDX81189	Canola	cytosol, nucleus, plastid	67.67	72.64
Bra037748.1-P	Field mustard	cytosol	72.59	72.44
KRH57887	Soybean	cytosol	35.76	70.76
GSMUA_Achr11P...	Banana	cytosol	28.69	45.58
GSMUA_Achr4P04710_001	Banana	cytosol	28.27	44.9
GSMUA_Achr8P00030_001	Banana	cytosol	28.69	43.51
GSMUA_Achr3P26790_001	Banana	cytosol	24.2	42.48
GSMUA_Achr11P...	Banana	cytosol	24.84	41.28
GSMUA_Achr11P...	Banana	cytosol	26.77	41.25
GSMUA_Achr3P03700_001	Banana	cytosol	25.91	40.07
GSMUA_Achr4P04700_001	Banana	cytosol, extracellular	26.34	39.05
GSMUA_Achr9P12350_001	Banana	cytosol	26.12	37.89
GSMUA_Achr11P...	Banana	cytosol	25.7	35.93
GSMUA_Achr4P02420_001	Banana	cytosol	18.42	35.68
GSMUA_Achr3P09020_001	Banana	cytosol	30.84	30.51
GSMUA_Achr2P17970_001	Banana	cytosol	24.63	28.89
GSMUA_Achr9P17590_001	Banana	cytosol	30.84	28.74
GSMUA_Achr7P04820_001	Banana	cytosol	23.34	27.66
GSMUA_Achr11P...	Banana	mitochondrion	24.2	26.34
GSMUA_Achr1P15530_001	Banana	cytosol	25.48	25.7
GSMUA_Achr8P00940_001	Banana	cytosol	24.63	25.56
GSMUA_Achr8P01120_001	Banana	nucleus	30.84	24.91
GSMUA_Achr8P08900_001	Banana	nucleus	30.41	21.88
GSMUA_Achr11P...	Banana	nucleus	31.05	20.77
GSMUA_Achr5P25400_001	Banana	nucleus	30.84	20.63

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.5	MapMan:15.3.3.4.3	MapMan:18.4.3.1.5	Gene3D:3.30.200.20	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524
GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G18030_001	EnsemblPlants:GSMUA_Achr5P18030_001	EnsemblPlants:GSMUA_Achr5T18030_001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	UniProt:M0SZI2	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF92	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI000295708A	SEG:seg	:	:

Description

Cyclin-dependent kinase E-1 [Source:GMGC_GENE;Acc:GSMUA_Achr5G18030_001]

Coordinates

chr5:+:19273470..19284961

Molecular Weight (calculated)

52092.7 Da

IEP (calculated)

9.452

GRAVY (calculated)

-0.352

Length

467 amino acids

Sequence
(BLAST)

001: MGDGRSGGGG GVNRPAWLQQ YDLVGKIGEG TYGLVFLART NLRKCCIAIK KFKQSKEGDG VSPTAIREIM LLRETCHENV VKLVNVHINH VDMSLYLAFD
101: YSEYDLYEII RHHREKLSHS INQYTVKSLL WQLLNGLNYL HSNWIIHRDL KPSNILVMGD GEEHGVVKIA DFGLARIYQA PLKPLYENGV VVTIWYRAPE
201: LLLGAKHYTS AVDMWAVGCI FAELLTLKPL FQGVEAKATP NSFQLDQLDK IFKVLGHPTP ERWPTLVNLP YWQNDQQHIQ GHKYDNHGLH NFVTVPQKSP
301: AYDLLSKMLE YDSRKRITAA QALEHEYFRM DPLPGRNALV PSQPGEKIVN YPARPVDTTA DFEGTVAVQP SQPVSSGNAA SGNIAAASVA PSRSMPRSMH
401: VVGMQRMPNT GMSTFNVAPQ AGIGAPSSGN IPIPRGAAVQ AHQQQLRRKD PSMGMQNPGY PQQKRRF

Best Arabidopsis Sequence Match ( AT5G63610.1 )
(BLAST)

001: MGDGSSSRSN SSNSTSEKPE WLQQYNLVGK IGEGTYGLVF LARTKTPPKR PIAIKKFKQS KDGDGVSPTA IREIMLLREI SHENVVKLVN VHINFADMSL
101: YLAFDYAEYD LYEIIRHHRD KVGHSLNTYT VKSLLWQLLN GLNYLHSNWI IHRDLKPSNI LVMGDAEEHG IVKIADFGLA RIYQAPLKPL SDNGVVVTIW
201: YRAPELLLGS KHYTSAVDMW AVGCIFAELL TLKPLFQGAE AKSSQNPFQL DQLDKIFKIL GHPTMDKWPT LVNLPHWQND VQHIQAHKYD SVGLHNVVHL
301: NQKSPAYDLL SKMLEYDPLK RITASQALEH EYFRMDPLPG RNAFVASQPM EKNVNYPTRP VDTNTDFEGT TSINPPQAVA AGNVAGNMAG AHGMGSRSMP
401: RPMVAHNMQR MQQSQGMMAY NFPAQAGLNP SVPLQQQRGM AQPHQQQQLR RKDPGMGMSG YAPPNKSRRL

Arabidopsis Description

CDKE-1Cyclin-dependent kinase E-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.