CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68573	nucleus
CDX69768	nucleus
CDX69832	nucleus
CDX72453	nucleus
CDX72643	nucleus
CDX75405	nucleus
CDX76265	nucleus
CDX77932	nucleus
CDX81722	nucleus
CDX82309	nucleus
CDX83112	nucleus
CDX91612
CDX92305	nucleus
CDX93296	nucleus
CDX96836	nucleus
CDX97009	nucleus
CDX97090	nucleus
CDX99264	nucleus
CDY02078	nucleus
CDY02095	nucleus
CDY11608	endoplasmic reticulum
CDY17793	nucleus
CDY22987	nucleus
CDY23003	nucleus
CDY23022	nucleus
CDY27099
CDY29570	nucleus
CDY36574	nucleus
CDY38800	endoplasmic reticulum
CDY49278	nucleus
CDY53304	nucleus
CDY57741	nucleus
CDY59943	endoplasmic reticulum
CDY66415	nucleus
CDY67142	endoplasmic reticulum
CDY69708	nucleus

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63610.1	CDX81722	AT1G15570.1	20407024
AT5G63610.1	CDX96836	AT1G15570.1	20407024
AT5G63610.1	CDY36574	AT1G15570.1	20407024
AT5G63610.1	CDY53304	AT1G15570.1	20407024
AT5G63610.1	CDY66415	AT1G15570.1	20407024
AT5G63610.1	CDY11608	AT1G70210.1	20407024
AT5G63610.1	CDY38800	AT1G70210.1	20407024
AT5G63610.1	CDY59943	AT1G70210.1	20407024
AT5G63610.1	CDY67142	AT1G70210.1	20407024
AT5G63610.1	CDX82309	AT3G19150.1	20407024
AT5G63610.1	CDX92305	AT3G19150.1	20407024
AT5G63610.1	CDX99264	AT3G19150.1	20407024
AT5G63610.1	CDY22987	AT3G19150.1	20407024
AT5G63610.1	CDX68573	AT3G50070.1	20407024
AT5G63610.1	CDX83112	AT3G50070.1	20407024
AT5G63610.1	CDY02095	AT3G50070.1	20407024
AT5G63610.1	CDY23022	AT3G50070.1	20407024
AT5G63610.1	CDX77932	AT3G50630.1	20407024
AT5G63610.1	CDX93296	AT3G50630.1	20407024
AT5G63610.1	CDY02078	AT3G50630.1	20407024
AT5G63610.1	CDY17793	AT3G50630.1	20407024
AT5G63610.1	CDY23003	AT3G50630.1	20407024
AT5G63610.1	CDX72453	AT4G34160.1	20407024
AT5G63610.1	CDX75405	AT4G34160.1	20407024
AT5G63610.1	CDX76265	AT4G34160.1	20407024
AT5G63610.1	CDY49278	AT4G34160.1	20407024
AT5G63610.1	CDY57741	AT4G34160.1	20407024
AT5G63610.1	CDY69708	AT4G34160.1	20407024
AT5G63610.1	CDX72643	AT4G37630.1	20407024
AT5G63610.1	CDY29570	AT4G37630.1	20407024
AT5G63610.1	CDX69832	AT5G10440.1	20407024
AT5G63610.1	CDX97009	AT5G10440.1	20407024
AT5G63610.1	CDX69768	AT5G11300.1	20407024
AT5G63610.1	CDX97090	AT5G11300.1	20407024
AT5G63610.1	CDX91612	AT5G51910.1	21798944
AT5G63610.1	CDY27099	AT5G51910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60036	Canola	cytosol	99.54	92.52
Bra037748.1-P	Field mustard	cytosol	99.31	92.31
AT5G63610.1	Thale cress	cytosol	94.71	87.66
KRH59626	Soybean	cytosol	54.25	76.13
Solyc12g027870.1.1	Tomato	cytosol	58.16	75.3
KRH40974	Soybean	cytosol, nucleus	74.94	70.72
KRH63972	Soybean	cytosol	74.48	70.13
VIT_07s0031g02680.t01	Wine grape	cytosol	75.63	68.4
GSMUA_Achr11P...	Banana	cytosol	73.1	68.24
TraesCS1D01G201600.1	Wheat	cytosol	73.56	68.09
TraesCS1A01G198100.2	Wheat	cytosol	73.56	68.09
TraesCS1B01G212800.1	Wheat	cytosol	73.33	67.87
HORVU1Hr1G051380.3	Barley	cytosol	73.33	67.87
GSMUA_Achr5P18030_001	Banana	cytosol	72.64	67.67
Os10t0580300-01	Rice	cytosol, plasma membrane	73.56	67.37
OQU92050	Sorghum	cytosol	72.87	67.3
Zm00001d014438_P001	Maize	cytosol	72.41	66.88
KRH57887	Soybean	cytosol	31.95	58.9
CDX68497	Canola	cytosol	29.2	43.2
CDX83047	Canola	cytosol	29.2	40.71
CDX87018	Canola	cytosol	21.84	40.08
CDY66197	Canola	cytosol	28.74	36.98
CDX76164	Canola	cytosol	25.75	36.84
CDY13189	Canola	cytosol	25.75	36.84
CDY01345	Canola	cytosol	26.67	36.71
CDY31856	Canola	cytosol	26.67	36.71
CDY07716	Canola	cytosol	25.98	36.57
CDY62439	Canola	cytosol, nucleus, plasma membrane	25.98	36.45
CDX87588	Canola	cytosol	25.75	35.78
CDX88294	Canola	cytosol	25.75	35.78
CDY36228	Canola	cytosol	27.82	34.87
CDX96131	Canola	cytosol	27.82	34.87
CDY45733	Canola	cytosol, plastid, vacuole	11.72	33.55
CDY69065	Canola	cytosol	11.72	33.55
CDX73001	Canola	cytosol	30.11	33.0
CDY05870	Canola	cytosol, plastid	28.74	32.98
CDY21722	Canola	cytosol	28.97	32.39
CDY60132	Canola	cytosol	29.43	32.24
CDX96739	Canola	cytosol	28.97	32.06
CDX81858	Canola	cytosol	28.51	31.88
CDX83876	Canola	cytosol	28.51	31.39
CDX87784	Canola	cytosol	19.08	31.2
CDY38979	Canola	cytosol	26.21	26.03
CDY09272	Canola	cytosol	26.44	24.95
CDX76497	Canola	cytosol	26.21	24.73
CDY13047	Canola	cytosol	25.98	24.3
CDY01580	Canola	cytosol	25.75	24.3
CDY67496	Canola	cytosol	17.47	24.05
CDY39427	Canola	cytosol	25.98	23.54
CDY37922	Canola	nucleus	26.67	21.89
CDY49306	Canola	cytosol	23.22	21.13
CDY56886	Canola	nucleus	24.83	21.09
CDY23116	Canola	endoplasmic reticulum, nucleus, plasma membrane	26.44	20.43
CDY01821	Canola	nucleus	29.66	18.51
CDX96081	Canola	nucleus	29.89	18.34
CDY26373	Canola	mitochondrion	1.38	6.74
CDX87783	Canola	extracellular, mitochondrion	1.38	5.08

Protein Annotations

Gene3D:1.10.510.10	MapMan:13.1.1.2.5	MapMan:15.3.3.4.3	MapMan:18.4.3.1.5	Gene3D:3.30.200.20	GO:A0A078CYX2
EnsemblPlants:CDX81189	ProteinID:CDX81189	ProteinID:CDX81189.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00134650001
InterPro:IPR000719	InterPro:Kinase-like_dom_sf	PFAM:PF00069	PIRSF:PIRSF000654	ScanProsite:PS00107	ScanProsite:PS00108
PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF92	InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00220
SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EDD6D5	SEG:seg	:	:

Description

BnaC09g06000D

Coordinates

chrLK031824:-:46768..48739

Molecular Weight (calculated)

48780.6 Da

IEP (calculated)

9.740

GRAVY (calculated)

-0.480

Length

435 amino acids

Sequence
(BLAST)

001: MGDGSSTRSN SSNSSNSEKP EWLQQYNLVG KIGEGTYGLV FLARTKTQPK RPIAIKKFKQ SKDGDGVSPT AIREIMLLRE ISHENVVKLF NVHINFADMS
101: LYLAFDYAEY DLYEIIRHHR DKVGHSLNQY TVKSLLWQLL NGLNYLHSNW IIHRDLKPSN ILVMGEGEEH GIMKIADFGL ARIFQAPLKP LSDNGVVVTI
201: WYRAPELLLG SKHYTSAVDM WAVGCIFAEL LTLKPLFQGA EAKSSQNPFQ HIQAHKYDSA GLHNVVHLNL KSPAYDLLSK MLEYDPLKRI TASQALEHEY
301: FRMDPLPGRN AFVASQPMEK NVNYPTRPVD TNTDFEGTTS INPPQGVAAG NVAGGHGMGS RTMPRPMVAH NMQRMQPQGG VMAYNFPAQA GMNPSVPMQQ
401: RGMAQPHQQQ QQQLRRKDPG MGMSGYAPPN KNRRL

Best Arabidopsis Sequence Match ( AT5G63610.1 )
(BLAST)

001: MGDGSSSRSN SSNSTSEKPE WLQQYNLVGK IGEGTYGLVF LARTKTPPKR PIAIKKFKQS KDGDGVSPTA IREIMLLREI SHENVVKLVN VHINFADMSL
101: YLAFDYAEYD LYEIIRHHRD KVGHSLNTYT VKSLLWQLLN GLNYLHSNWI IHRDLKPSNI LVMGDAEEHG IVKIADFGLA RIYQAPLKPL SDNGVVVTIW
201: YRAPELLLGS KHYTSAVDMW AVGCIFAELL TLKPLFQGAE AKSSQNPFQL DQLDKIFKIL GHPTMDKWPT LVNLPHWQND VQHIQAHKYD SVGLHNVVHL
301: NQKSPAYDLL SKMLEYDPLK RITASQALEH EYFRMDPLPG RNAFVASQPM EKNVNYPTRP VDTNTDFEGT TSINPPQAVA AGNVAGNMAG AHGMGSRSMP
401: RPMVAHNMQR MQQSQGMMAY NFPAQAGLNP SVPLQQQRGM AQPHQQQQLR RKDPGMGMSG YAPPNKSRRL

Arabidopsis Description

CDKE-1Cyclin-dependent kinase E-1 [Source:UniProtKB/Swiss-Prot;Acc:Q84TI6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.