CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, vacuole, plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid, vacuole
Any Predictor:	cytosol, nucleus, plastid, vacuole
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72313	nucleus
CDX79732	nucleus
CDX84949
CDX90857
CDX94550
CDY03883
CDY13444	nucleus
CDY16672
CDY21298
CDY24170
CDY27590
CDY36943
CDY46773	nucleus
CDY51595

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63370.1	CDX84949	AT2G26430.1	20706207
AT5G63370.1	CDY03883	AT2G26430.1	20706207
AT5G63370.1	CDY27590	AT2G26430.1	20706207
AT5G63370.1	CDY51595	AT2G26430.1	20706207
AT5G63370.1	CDX79732	AT2G37340.1	23404887
AT5G63370.1	CDY46773	AT2G37340.1	23404887
AT5G63370.1	CDX79732	AT2G37340.1	23404887
AT5G63370.1	CDY46773	AT2G37340.1	23404887
AT5G63370.1	CDX90857	AT3G24690.1	20706207
AT5G63370.1	CDX94550	AT3G24690.1	20706207
AT5G63370.1	CDY16672	AT3G24690.1	20706207
AT5G63370.1	CDY21298	AT3G24690.1	20706207
AT5G63370.1	CDY24170	AT3G47620.1	21798944
AT5G63370.1	CDY36943	AT3G47620.1	21798944
AT5G63370.1	CDX72313	AT4G31580.1	23404887
AT5G63370.1	CDY13444	AT4G31580.1	23404887
AT5G63370.1	CDX72313	AT4G31580.1	23404887
AT5G63370.1	CDY13444	AT4G31580.1	23404887

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY69065	Canola	cytosol	98.03	98.03
Bra029230.1-P	Field mustard	cytosol, mitochondrion	98.68	45.73
PGSC0003DMT400092022	Potato	cytosol	53.29	37.33
CDX87018	Canola	cytosol	41.45	26.58
PGSC0003DMT400086876	Potato	cytosol	53.95	26.03
AT5G63370.1	Thale cress	nucleus	90.79	22.55
CDX68497	Canola	cytosol	43.42	22.45
CDX83047	Canola	cytosol	43.42	21.15
CDY66197	Canola	cytosol	44.08	19.82
CDY31856	Canola	cytosol	40.13	19.3
CDY01345	Canola	cytosol	40.13	19.3
CDX87588	Canola	cytosol	39.47	19.17
CDX88294	Canola	cytosol	39.47	19.17
CDX76164	Canola	cytosol	38.16	19.08
CDY13189	Canola	cytosol	38.16	19.08
CDY56886	Canola	nucleus	61.84	18.36
CDX87784	Canola	cytosol	31.58	18.05
CDY37922	Canola	nucleus	62.5	17.92
CDY07716	Canola	cytosol	36.18	17.8
CDY62439	Canola	cytosol, nucleus, plasma membrane	36.18	17.74
CDY05870	Canola	cytosol, plastid	43.42	17.41
CDX96131	Canola	cytosol	36.84	16.14
CDY36228	Canola	cytosol	36.84	16.14
CDX96739	Canola	cytosol	41.45	16.03
CDY60132	Canola	cytosol	41.45	15.87
CDY01821	Canola	nucleus	72.37	15.78
CDX81858	Canola	cytosol	40.13	15.68
CDY21722	Canola	cytosol	40.13	15.68
CDX73001	Canola	cytosol	40.79	15.62
CDX96081	Canola	nucleus	72.37	15.51
CDX83876	Canola	cytosol	38.82	14.94
CDY60036	Canola	cytosol	42.11	13.68
CDY38979	Canola	cytosol	34.21	11.87
CDX81189	Canola	cytosol, nucleus, plastid	33.55	11.72
CDY09272	Canola	cytosol	35.53	11.71
CDX76497	Canola	cytosol	35.53	11.71
CDY49306	Canola	cytosol	36.18	11.51
CDY01580	Canola	cytosol	33.55	11.06
CDY13047	Canola	cytosol	33.55	10.97
CDY39427	Canola	cytosol	33.55	10.62
CDY23116	Canola	endoplasmic reticulum, nucleus, plasma membrane	32.89	8.88
CDY67496	Canola	cytosol	3.29	1.58
CDX87783	Canola	extracellular, mitochondrion	0.66	0.85
CDY26373	Canola	mitochondrion	0.0	0.0

Protein Annotations

Gene3D:1.10.510.10	MapMan:50.2.7	GO:A0A078I9C3	UniProt:A0A078I9C3	EnsemblPlants:CDY45733	ProteinID:CDY45733
ProteinID:CDY45733.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005488
GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00082646001	InterPro:IPR000719	InterPro:Kinase-like_dom_sf
PFAM:PF00069	PFscan:PS50011	PANTHER:PTHR24056	PANTHER:PTHR24056:SF332	InterPro:Prot_kinase_dom	SMART:SM00220
SUPFAM:SSF56112	UniParc:UPI0004EDE931	:	:	:	:

Description

BnaC02g42490DBnaC02g42490D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9C3]

Coordinates

chrLK032635:+:7339..8205

Molecular Weight (calculated)

17239.0 Da

IEP (calculated)

9.085

GRAVY (calculated)

-0.182

Length

152 amino acids

Sequence
(BLAST)

001: MVITQWYRPP ELLLGAKQYS TAVDMWSIGC IMAELLSQKP LFPGKTELDQ LQKIFAVLGT PNESIWPGFS SLPNAKAKFP TQSYNLLRKK FPAISFVGGQ
101: ILSERGFDLL NGLLTLDPEK RLTVEEALNH SWFQEVPLPK SQDFMPTFPP RR

Best Arabidopsis Sequence Match ( AT5G63370.2 )
(BLAST)

001: MSPEPSYLAP VQPSEALLAV KHPVDDLEEG QLEEEQVMQE DVKEGLLEEE QVMQEPNIKT SRWGTGLTSP KEELISVNVS KTNRWNRSSL TPECEEVMVS
101: EEQQCYSSGS GSGHLSVEKL SADGNSGREY YSSDHDELEH EDQDSLTPGE MNMMFGSRSV NEFQKLNKIN EGTYGIVYKA RDEKTKEIVA LKKIKMKEDR
201: FEEEYGFPLT SLREINILLS CNHPAIVNVK EVVVGGKNDN DVYMVMEHLE HDLRGVMDRR KEPFSTSEVK CLMMQLLDGL KYLHTNWIIH RDLKPSNLLM
301: NNCGELKICD FGMARQYGSP IKPYTQMVIT QWYRPPELLL GAKEYSTAVD MWSVGCIMAE LLSQKPLFPG KSELDQLQKI FAVLGTPNEA IWPGFSSFPN
401: AKAKFPTQPY NMLRKKFPAI SFVGGQILSE RGFDLLNSLL TLDPEKRLTV EDALNHGWFH EVPLPKSKDF MPTYPPKR

Arabidopsis Description

CDKG1Cyclin-dependent kinase G1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGW5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.