CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029489.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	100.0	100.0
CDX94550	Canola	nucleus	90.06	87.88
CDY21298	Canola	nucleus	50.93	61.65
CDX90857	Canola	nucleus	47.83	59.69
AT3G24690.1	Thale cress	mitochondrion	46.58	47.47
HORVU7Hr1G119330.1	Barley	cytosol	15.53	37.88
HORVU1Hr1G071550.1	Barley	cytosol	15.53	37.88
HORVU4Hr1G004550.1	Barley	cytosol	14.91	36.36
HORVU3Hr1G093520.1	Barley	cytosol	14.91	35.82
TraesCS4B01G030200.1	Wheat	cytosol	22.98	31.09
CDY46422	Canola	nucleus	35.4	14.11
CDY16217	Canola	nucleus	34.78	13.76
CDY52255	Canola	nucleus	34.78	13.63
CDY14707	Canola	nucleus	34.78	13.43
Zm00001d033549_P003	Maize	mitochondrion, plasma membrane	32.92	11.73
EER93647	Sorghum	plastid	33.54	11.61
GSMUA_Achr4P22310_001	Banana	nucleus	31.68	11.51
Zm00001d013528_P001	Maize	plasma membrane	31.68	11.16
GSMUA_Achr4P17410_001	Banana	nucleus	23.6	10.61
HORVU7Hr1G119250.1	Barley	cytosol	6.83	10.28
Os03t0688200-01	Rice	plastid	29.19	10.09
TraesCS4B01G029200.1	Wheat	plastid	28.57	10.07
TraesCS4D01G027100.2	Wheat	plastid	28.57	9.91
TraesCS4A01G283500.3	Wheat	plastid	28.57	9.83
HORVU4Hr1G004410.3	Barley	plastid	26.71	9.62
TraesCS4A01G280000.1	Wheat	cytosol	26.09	6.81
TraesCS4D01G027500.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	21.74	6.73
TraesCS4B01G032400.1	Wheat	cytosol	27.95	6.48
TraesCS7A01G186400.1	Wheat	cytosol	27.95	6.47
TraesCS6A01G179400.1	Wheat	cytosol, nucleus, plasma membrane	27.95	6.11
TraesCS4D01G030100.1	Wheat	cytosol	27.33	6.02
TraesCS4A01G258800.2	Wheat	cytosol	28.57	5.68
TraesCS3B01G283500.1	Wheat	cytosol	8.07	5.33
TraesCS7A01G186200.1	Wheat	cytosol	8.7	3.59
TraesCS4A01G280100.1	Wheat	cytosol	8.7	3.54

Protein Annotations

EnsemblPlants:CDY16672	EnsemblPlantsGene:GSBRNA2T00094519001	PANTHER:PTHR37736	ProteinID:CDY16672	ProteinID:CDY16672.1	SEG:seg
UniParc:UPI000254270A	UniProt:A0A078FV52	MapMan:35.2	:	:	:

Description

BnaA09g20500DBnaA09g20500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FV52]

Coordinates

chrLK032066:+:458286..459174

Molecular Weight (calculated)

17772.0 Da

IEP (calculated)

9.557

GRAVY (calculated)

-1.085

Length

161 amino acids

Sequence
(BLAST)

001: MAVTEGQQVM ALISKRLRAH RKRYNRITEM EEAVSQGKTL NKEQQEAIRS KPIVTALIEE LEKLRLPPSP PPSTAGSEEI NLPAKKKERK EEAEEENLTE
101: KDVTDPEGCK ISDGLDAGEV SKDNISPCSV SSQDGTTSPP PATNAKPRRK RNKAKKPKTS N

Best Arabidopsis Sequence Match ( AT3G24690.1 )
(BLAST)

001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ

Arabidopsis Description

BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). [Source:TAIR;Acc:AT3G24690]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.