Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G280000.1 | Wheat | cytosol | 74.57 | 97.89 |
| TraesCS4D01G030100.1 | Wheat | cytosol | 84.07 | 93.16 |
| TraesCS7A01G186400.1 | Wheat | cytosol | 70.0 | 81.47 |
| TraesCS6A01G179400.1 | Wheat | cytosol, nucleus, plasma membrane | 67.78 | 74.59 |
| TraesCS4A01G283500.3 | Wheat | plastid | 33.21 | 57.48 |
| Zm00001d033549_P003 | Maize | mitochondrion, plasma membrane | 25.68 | 46.02 |
| EER93647 | Sorghum | plastid | 25.68 | 44.73 |
| Zm00001d013528_P001 | Maize | plasma membrane | 24.69 | 43.76 |
| Os03t0688200-01 | Rice | plastid | 24.32 | 42.27 |
| GSMUA_Achr4P22310_001 | Banana | nucleus | 17.16 | 31.38 |
| KRH74755 | Soybean | nucleus | 17.16 | 31.17 |
| AT3G24690.1 | Thale cress | mitochondrion | 6.05 | 31.01 |
| KRH69381 | Soybean | nucleus | 16.79 | 30.56 |
| GSMUA_Achr4P17410_001 | Banana | nucleus | 13.46 | 30.45 |
| Solyc05g006900.1.1 | Tomato | cytosol, endoplasmic reticulum, golgi | 12.22 | 30.09 |
| VIT_01s0026g01470.t01 | Wine grape | cytosol | 16.17 | 29.5 |
| CDY21298 | Canola | nucleus | 4.69 | 28.57 |
| CDY16672 | Canola | cytosol, mitochondrion, nucleus, plastid | 5.68 | 28.57 |
| Bra029489.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 5.68 | 28.57 |
| Solyc01g010440.2.1 | Tomato | nucleus | 15.56 | 28.51 |
| PGSC0003DMT400019928 | Potato | nucleus | 15.31 | 28.38 |
| CDX90857 | Canola | nucleus | 4.44 | 27.91 |
| CDX94550 | Canola | nucleus | 5.68 | 27.88 |
| KRH74859 | Soybean | peroxisome | 12.72 | 27.84 |
| PGSC0003DMT400045462 | Potato | nucleus | 14.57 | 27.57 |
| KRH75984 | Soybean | cytosol | 7.16 | 27.36 |
| Bra000790.1-P | Field mustard | nucleus | 3.7 | 23.44 |
| TraesCS4A01G280100.1 | Wheat | cytosol | 6.79 | 13.92 |
| TraesCS7A01G186200.1 | Wheat | cytosol | 5.43 | 11.28 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G258800.2 | EnsemblPlantsGene:TraesCS4A01G258800 | InterPro:DUF1618 | PANTHER:PTHR37736 | PFAM:PF07762 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:571359780..571364276
Molecular Weight (calculated)
89792.8 Da
IEP (calculated)
6.246
GRAVY (calculated)
-0.391
Length
810 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMQDHPSPC GRHPQILLDR KCLVGQLKNS TTAKTKNSKG HHLELSFKAV DPPAISLCLV SCVDQTGELL PVDPRILGEA GGSVLLAFTF FGSVHHLPFT
101: DYFVYKAGPN FPCLHLIPRP YPSSFEANLV AILPVNDNSE DFAVVFPHVE YFGLESRKHY TLHIYRSDAN DWHTQVAHIA EDNETRIAKR KLLLHDAMSV
201: AYAENGIIGW IDLWWGILLC NVLDKKPIIR FVPLPVPEPC DASEFHLTFE NLTPRPHRHV TIFNDLIKFV ELNFHVQDAF CNMKRGKDYG WMARTWSRSI
301: YSDIWHDGLT FDTSELSFSD SSLPNLLPEM FDDKNSLTWG NLTSAGPTLS LHDDNVIYIM AKESMCHRTA YVLAVNGKSL KLESGAPCSA ENMLWFEPTY
401: DPCVLFRSFG TTSESVKEFE TKGTISETKE GLALSVVSKR LRALRKKQDR IAEMEESVAA GKVLNQDQKE VMHSKPTITA LIDELERLRV PLSTALTKEL
501: STVPALAAGS SSFGSDLSIQ DLALVYFGSL FYVKSPDEFI TTMVARKHER SSCITYGYVW DDTVDLLTEN DLDAVSAVAA LATARPASAV GVSHHDALQA
601: CAHHARLWLT RADVPIHPGS SVTYAAVRSK LDRIMASDYY TAHHGSESVQ ALMSMTVPPE APSLKENIAA EGHKEEEEDS SHATEIYNGH QSNAADVQNM
701: EGKSPVNPHE EYPLAEAEQE KFDVEEQDQR YAEPKERQFQ RPRRSFQNQR GGDRGRRGAY PNGHGRHGGG RGMGSAYQNG RGGGGGGGYQ GGGGEYQNGW
801: GGGGVLQQQR
101: DYFVYKAGPN FPCLHLIPRP YPSSFEANLV AILPVNDNSE DFAVVFPHVE YFGLESRKHY TLHIYRSDAN DWHTQVAHIA EDNETRIAKR KLLLHDAMSV
201: AYAENGIIGW IDLWWGILLC NVLDKKPIIR FVPLPVPEPC DASEFHLTFE NLTPRPHRHV TIFNDLIKFV ELNFHVQDAF CNMKRGKDYG WMARTWSRSI
301: YSDIWHDGLT FDTSELSFSD SSLPNLLPEM FDDKNSLTWG NLTSAGPTLS LHDDNVIYIM AKESMCHRTA YVLAVNGKSL KLESGAPCSA ENMLWFEPTY
401: DPCVLFRSFG TTSESVKEFE TKGTISETKE GLALSVVSKR LRALRKKQDR IAEMEESVAA GKVLNQDQKE VMHSKPTITA LIDELERLRV PLSTALTKEL
501: STVPALAAGS SSFGSDLSIQ DLALVYFGSL FYVKSPDEFI TTMVARKHER SSCITYGYVW DDTVDLLTEN DLDAVSAVAA LATARPASAV GVSHHDALQA
601: CAHHARLWLT RADVPIHPGS SVTYAAVRSK LDRIMASDYY TAHHGSESVQ ALMSMTVPPE APSLKENIAA EGHKEEEEDS SHATEIYNGH QSNAADVQNM
701: EGKSPVNPHE EYPLAEAEQE KFDVEEQDQR YAEPKERQFQ RPRRSFQNQR GGDRGRRGAY PNGHGRHGGG RGMGSAYQNG RGGGGGGGYQ GGGGEYQNGW
801: GGGGVLQQQR
001: MAATASSEAS EGPVMGLINK RLRALRKKYN RITQMEESIS QGKTLNKEQE EVLRSKPAVV ILIDELEKIR APLSAAVTEE ISLATQLNRA SSDQTTASEQ
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
101: KEVTDIPQEV SGGDDGAKLE DLVNFLYFGS LFDVKSQNEF TSIMLTRTHE RSCCLSYDYV TDDATDLLGD RDLDSISQLW SLMVSRPVDS SLSHKNALER
201: CVEHAKLWLA NSEQPIESNC NTSYAALREK LKKIMASDYF TTTPEMKAPV DVAAAAGNYT SYQVPVDVEA SGHYQQKEED ASNSKEVESV VNDQSQQDEH
301: QKVELVTEGE VVHGQQEQGY TQVGGAENAK RDYVPRGSYQ NQRGRRGARR GGGGYQNGRG GRGGGGGYQN GRYESYDQSG GNGYQRNYYN NRGRGRGGGG
401: GGGNGHSYNN YQDPNVAVAS
Arabidopsis Description
Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9LFX8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.